Variant report

Variant	rs12194431
Chromosome Location	chr6:109830850-109830851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109822082..109824887-chr6:109829770..109832005,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10872036	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872037	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872038	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1096137	0.82[ASN][1000 genomes]
rs1096141	0.82[ASN][1000 genomes]
rs1103996	0.95[CEU][hapmap]
rs11153186	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11153196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1115978	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12191099	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12209401	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12216333	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1321206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321208	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1322815	0.91[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1406955	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17070673	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853030	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1923057	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2145145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2884037	0.82[JPT][hapmap]
rs2884063	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3823234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4945834	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946985	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4946990	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4947005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4947007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4947013	0.95[CEU][hapmap]
rs4947014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs62435962	0.81[ASN][1000 genomes]
rs6906729	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6915268	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7757153	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7757895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7759120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7775414	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829810	0.82[ASN][1000 genomes]
rs829811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs865503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs866685	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9320293	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9320301	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9372213	0.94[JPT][hapmap]
rs9372223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9374104	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374105	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9374112	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9384712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9384719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9386809	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9386811	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386815	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9386829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9398210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398212	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9400292	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9400298	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9400302	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9480972	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9480980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487126	0.81[AFR][1000 genomes]
rs9487127	0.88[YRI][hapmap]
rs9487132	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9487161	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9487181	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9487182	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9766863	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109823400-109834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:109825000-109837000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:109825200-109834600	Weak transcription	HSMMtube	muscle
5	chr6:109829200-109834600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:109829800-109833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr6:109829800-109834600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:109830000-109831800	Enhancers	Esophagus	oesophagus
9	chr6:109830000-109832000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr6:109830200-109831400	Weak transcription	Placenta	Placenta
11	chr6:109830400-109833800	Weak transcription	Osteobl	bone
12	chr6:109830600-109831200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:109830800-109831800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:109830800-109832000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links