Variant report

Variant	rs9320293
Chromosome Location	chr6:109861788-109861789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10872036	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872037	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10872038	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1096137	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1096141	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11153186	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153196	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1115978	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12175588	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12191099	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12194431	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12209401	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12216333	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1321206	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321208	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1406955	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17070673	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1923057	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2025149	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2145145	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884063	0.83[EUR][1000 genomes]
rs2884130	0.80[EUR][1000 genomes]
rs3799852	0.80[EUR][1000 genomes]
rs3823234	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945834	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4946985	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946990	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4947005	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4947007	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4947014	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62435962	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6899688	0.80[EUR][1000 genomes]
rs6899915	0.80[EUR][1000 genomes]
rs6906729	0.80[EUR][1000 genomes]
rs6915268	0.80[EUR][1000 genomes]
rs6921615	0.80[EUR][1000 genomes]
rs6933962	0.80[EUR][1000 genomes]
rs6941211	0.80[EUR][1000 genomes]
rs7757153	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757895	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759120	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7763229	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7764711	0.80[EUR][1000 genomes]
rs7771150	0.80[EUR][1000 genomes]
rs7772817	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7775414	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829810	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs829811	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs865503	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs866685	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9285400	0.80[EUR][1000 genomes]
rs9320301	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372223	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374104	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374105	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9374111	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374112	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9384712	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384719	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9386809	0.80[EUR][1000 genomes]
rs9386811	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386815	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386819	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386822	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9386828	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9386829	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398210	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9398212	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9400292	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9400298	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9400302	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480972	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9480980	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487161	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487181	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487182	0.87[ASN][1000 genomes]
rs9766863	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109848400-109865600	Weak transcription	Aorta	Aorta
2	chr6:109848400-109870400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109850800-109870000	Weak transcription	Left Ventricle	heart
4	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea
5	chr6:109859200-109868000	Weak transcription	Spleen	Spleen
6	chr6:109859200-109873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:109860200-109870000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:109860600-109870000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:109860800-109866400	Weak transcription	Primary T cells from cord blood	blood
10	chr6:109861000-109862600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:109861200-109861800	ZNF genes & repeats	Lung	lung
12	chr6:109861200-109870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:109861400-109862200	ZNF genes & repeats	Thymus	Thymus
14	chr6:109861600-109862000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr6:109861600-109862200	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr6:109861600-109862200	Strong transcription	Fetal Thymus	thymus
17	chr6:109861600-109866400	Weak transcription	Ovary	ovary

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