Variant report

Variant	rs6941211
Chromosome Location	chr6:110038640-110038641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1096137	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1096141	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1103996	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11153196	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1115978	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12175588	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12191099	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12209401	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12216333	0.80[ASN][1000 genomes]
rs1406955	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1923057	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2025149	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2145145	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2884130	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799852	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3823234	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945834	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4945838	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946985	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4946990	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4947005	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4947007	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4947013	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4947014	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4947020	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62435962	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6899688	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6899915	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906729	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6912209	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6921615	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6933962	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6936853	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757153	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7757895	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7759120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763229	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7764711	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7770807	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7771150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772817	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7775414	0.81[ASN][1000 genomes]
rs829810	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829811	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829812	0.83[AMR][1000 genomes]
rs865503	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs866685	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9285400	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9320293	0.80[EUR][1000 genomes]
rs9320301	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9372223	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374104	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374105	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9374111	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374112	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374120	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9384712	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9384719	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9386819	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9386822	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9386828	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386829	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9398210	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398212	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9400292	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9400298	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9400302	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9480972	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480980	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9487161	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9487181	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487182	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9487211	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110057000	Weak transcription	Left Ventricle	heart
2	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
3	chr6:110013200-110057000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:110013200-110057000	Weak transcription	Aorta	Aorta
5	chr6:110013600-110056000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:110013600-110056800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:110024200-110038800	Weak transcription	Thymus	Thymus
8	chr6:110024200-110056400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:110025000-110057000	Weak transcription	Fetal Thymus	thymus
10	chr6:110027000-110040400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:110027000-110052400	Weak transcription	Liver	Liver
12	chr6:110027000-110056400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:110028000-110044000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:110028000-110071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:110028200-110057200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:110028200-110080800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:110033200-110041000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:110034200-110039400	Strong transcription	Primary T cells from cord blood	blood
19	chr6:110034400-110041600	Weak transcription	Brain Substantia Nigra	brain
20	chr6:110034400-110042200	Weak transcription	NHLF	lung
21	chr6:110034400-110044400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:110034400-110060800	Weak transcription	Fetal Stomach	stomach
23	chr6:110034600-110041600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:110034600-110041800	Weak transcription	NHDF-Ad	bronchial
25	chr6:110034600-110046600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:110034600-110056400	Weak transcription	Fetal Brain Female	brain
27	chr6:110034600-110057000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:110034800-110038800	Weak transcription	Fetal Intestine Small	intestine
29	chr6:110034800-110040200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:110034800-110042000	Weak transcription	Lung	lung
31	chr6:110034800-110042400	Weak transcription	Brain Anterior Caudate	brain
32	chr6:110034800-110059000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:110035000-110044000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:110035000-110071400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:110035000-110084000	Weak transcription	GM12878-XiMat	blood
36	chr6:110035200-110039400	Weak transcription	Esophagus	oesophagus
37	chr6:110035200-110040400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:110035200-110056200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:110035200-110065000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:110035200-110094200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:110035400-110038800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:110035400-110039200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:110035400-110040800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:110035400-110057800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:110035400-110083000	Weak transcription	Brain Germinal Matrix	brain
46	chr6:110035600-110040200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:110035600-110040200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:110035600-110040600	Weak transcription	Gastric	stomach
49	chr6:110035600-110042000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:110035600-110044000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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