Variant report

Variant	rs1096137
Chromosome Location	chr6:110016908-110016909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:110)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:110 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:110016679-110017101	HepG2	liver:	n/a	n/a
2	CTCF	chr6:110016840-110016990	K562	blood:	n/a	n/a
3	CTCF	chr6:110016840-110016990	HPAF	blood vessel:	n/a	n/a
4	CTCF	chr6:110016860-110017010	SAEC	small airway:	n/a	n/a
5	CTCF	chr6:110016783-110016980	Hela-S3	cervix:	n/a	n/a
6	RAD21	chr6:110016613-110017067	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr6:110016789-110016919	ProgFib	skin:	n/a	n/a
8	CTCF	chr6:110016790-110016975	GM12878	blood:	n/a	n/a
9	ZNF143	chr6:110016820-110016960	GM12878	blood:	n/a	n/a
10	RAD21	chr6:110016707-110017034	H1-hESC	embryonic stem cell:	n/a	n/a
11	NR2F2	chr6:110016618-110017067	MCF-7	breast:	n/a	n/a
12	CTCF	chr6:110016810-110016937	LNCaP	prostate:	n/a	n/a
13	CTCF	chr6:110016677-110017072	GM12878	blood:	n/a	n/a
14	CTCF	chr6:110016820-110016970	Caco-2	colon:	n/a	n/a
15	CTCF	chr6:110016806-110016972	K562	blood:	n/a	n/a
16	NR2F2	chr6:110016676-110017020	K562	blood:	n/a	n/a
17	ZNF143	chr6:110016735-110017047	H1-hESC	embryonic stem cell:	n/a	n/a
18	SMC3	chr6:110016715-110017036	GM12878	blood:	n/a	n/a
19	CTCF	chr6:110016760-110016910	NHEK	skin:	n/a	n/a
20	CTCF	chr6:110016900-110017050	HCPEpiC	choroid plexus:	n/a	n/a
21	YY1	chr6:110016716-110016940	GM12878	blood:	n/a	n/a
22	CTCF	chr6:110016761-110016954	MCF-7	breast:	n/a	n/a
23	CTCF	chr6:110016780-110016950	GM12892	blood:	n/a	n/a
24	RAD21	chr6:110016730-110017014	GM12878	blood:	n/a	n/a
25	CTCF	chr6:110016837-110016938	GM20000	blood:	n/a	n/a
26	CTCF	chr6:110016800-110016950	HEK293	kidney:	n/a	n/a
27	CTCF	chr6:110016820-110016970	GM12865	blood:	n/a	n/a
28	CTCF	chr6:110016800-110016950	WERI-Rb-1	eye:	n/a	n/a
29	MAZ	chr6:110016749-110016923	K562	blood:	n/a	n/a
30	RAD21	chr6:110016600-110017204	MCF-7	breast:	n/a	n/a
31	CTCF	chr6:110016723-110016971	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTCF	chr6:110016760-110016910	HBMEC	blood vessel:	n/a	n/a
33	CTCF	chr6:110016800-110016950	GM12864	blood:	n/a	n/a
34	CTCF	chr6:110016784-110016954	NHEK	skin:	n/a	n/a
35	CTCF	chr6:110016800-110016950	GM12869	blood:	n/a	n/a
36	CTCF	chr6:110016762-110016995	HepG2	liver:	n/a	n/a
37	ARID3A	chr6:110016814-110017014	K562	blood:	n/a	n/a
38	CTCF	chr6:110016820-110016970	GM12873	blood:	n/a	n/a
39	JUND	chr6:110016820-110016942	K562	blood:	n/a	n/a
40	CTCF	chr6:110016800-110016950	HBMEC	blood vessel:	n/a	n/a
41	CTCF	chr6:110016840-110016990	HMF	breast:	n/a	n/a
42	YY1	chr6:110016762-110017011	H1-hESC	embryonic stem cell:	n/a	n/a
43	RAD21	chr6:110016579-110017148	HCT-116	colon:	n/a	n/a
44	CTCF	chr6:110016781-110016962	Gliobla	brain:	n/a	n/a
45	HDAC2	chr6:110016713-110016935	K562	blood:	n/a	n/a
46	RCOR1	chr6:110016730-110017031	K562	blood:	n/a	n/a
47	CTCF	chr6:110016844-110016985	GM10266	blood:	n/a	n/a
48	CTCF	chr6:110016773-110016952	MCF-7	breast:	n/a	n/a
49	CREB1	chr6:110016650-110016949	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr6:110016800-110016950	GM12870	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109916966..109917798-chr6:110016397..110017380,5	MCF-7	breast:
2	chr6:109916901..109917812-chr6:110016606..110017379,4	MCF-7	breast:

No data

Variant related genes	Relation type
AK9	TF binding region

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10872036	0.84[ASN][1000 genomes]
rs10872037	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10872038	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1096141	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1103996	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11153186	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11153196	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1115978	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12175588	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12191099	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12194431	0.82[ASN][1000 genomes]
rs12209401	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12216333	0.88[ASN][1000 genomes]
rs1321206	0.84[ASN][1000 genomes]
rs1321208	0.84[ASN][1000 genomes]
rs1406955	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17070673	0.84[ASN][1000 genomes]
rs1923057	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2025149	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145145	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2884130	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3799852	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3823234	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945834	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945838	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946985	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946990	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4947005	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4947007	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4947013	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4947014	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947020	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62435962	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6899688	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6899915	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6906729	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6912209	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6921615	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6933962	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936853	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941211	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7757153	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7757895	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7759120	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7763229	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7764711	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7770807	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7771150	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7772817	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7775414	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs829810	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs829812	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs865503	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs866685	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285400	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9320293	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9320301	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9372223	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374104	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374105	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374111	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374112	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374120	0.81[ASN][1000 genomes]
rs9384712	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9384719	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386811	0.84[ASN][1000 genomes]
rs9386815	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386819	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386822	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386828	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386829	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9398210	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398212	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400292	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9400298	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9400302	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480972	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480980	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487161	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487181	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487182	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487211	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933105	chr6:109933270-110064342	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv817322	chr6:109933272-110070574	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv830769	chr6:109944334-110078120	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv604485	chr6:109959269-110054486	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:110013000-110022400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:110013000-110023600	Weak transcription	Gastric	stomach
4	chr6:110013000-110024800	Weak transcription	Lung	lung
5	chr6:110013000-110025200	Weak transcription	Small Intestine	intestine
6	chr6:110013000-110027400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:110013000-110027400	Weak transcription	Spleen	Spleen
8	chr6:110013000-110057000	Weak transcription	Left Ventricle	heart
9	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
10	chr6:110013200-110020200	Weak transcription	Colonic Mucosa	Colon
11	chr6:110013200-110022200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:110013200-110022400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:110013200-110024200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:110013200-110026400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:110013200-110026600	Weak transcription	Ovary	ovary
16	chr6:110013200-110034000	Weak transcription	Fetal Stomach	stomach
17	chr6:110013200-110057000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:110013200-110057000	Weak transcription	Aorta	Aorta
19	chr6:110013400-110022200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:110013400-110023200	Weak transcription	Fetal Intestine Large	intestine
21	chr6:110013400-110038600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:110013600-110017200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:110013600-110017200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:110013600-110018600	Weak transcription	Osteobl	bone
25	chr6:110013600-110022200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:110013600-110022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:110013600-110022600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:110013600-110056000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr6:110013600-110056800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:110013800-110018000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:110013800-110018600	Weak transcription	NHDF-Ad	bronchial
32	chr6:110013800-110026400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:110013800-110026600	Weak transcription	Brain Substantia Nigra	brain
34	chr6:110013800-110029600	Weak transcription	Fetal Lung	lung
35	chr6:110014000-110017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:110014000-110027400	Weak transcription	Brain Angular Gyrus	brain
37	chr6:110014000-110034400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:110014200-110017200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:110014200-110017400	Weak transcription	Fetal Brain Male	brain
40	chr6:110014200-110018000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:110014400-110018600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:110014400-110023600	Weak transcription	Thymus	Thymus
43	chr6:110014600-110017800	Weak transcription	Brain Germinal Matrix	brain
44	chr6:110014600-110018000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:110014600-110018600	Weak transcription	Adipose Nuclei	Adipose
46	chr6:110014600-110022400	Weak transcription	Psoas Muscle	Psoas
47	chr6:110014600-110026600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:110014800-110018800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:110014800-110023200	Weak transcription	Stomach Mucosa	stomach
50	chr6:110014800-110023600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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