Variant report

Variant	rs9374120
Chromosome Location	chr6:110090347-110090348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1096137	0.81[ASN][1000 genomes]
rs1096141	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2025149	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2884130	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3799852	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3823234	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4945838	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4947005	0.83[AMR][1000 genomes]
rs4947007	0.80[AMR][1000 genomes]
rs4947014	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4947020	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62435962	0.80[AMR][1000 genomes]
rs6899688	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6899915	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6906729	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6912209	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921615	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6933962	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6936853	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6941211	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7759120	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7763229	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7764711	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7770807	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7771150	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7772817	0.81[AMR][1000 genomes]
rs829810	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs829811	0.80[ASN][1000 genomes]
rs865503	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs866685	0.80[AMR][1000 genomes]
rs9285400	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9372223	0.80[AMR][1000 genomes]
rs9487211	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv5436	chr6:110052812-110097662	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110035200-110094200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
4	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:110065200-110111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:110065400-110094200	Weak transcription	Brain Substantia Nigra	brain
9	chr6:110065800-110107400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:110065800-110107400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:110078800-110107400	Weak transcription	Fetal Brain Male	brain
12	chr6:110081000-110090800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:110081200-110094200	Weak transcription	Psoas Muscle	Psoas
14	chr6:110081200-110109600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:110081600-110092200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:110081600-110115000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:110081800-110093400	Weak transcription	Hela-S3	cervix
18	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:110082200-110119800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:110084200-110115400	Weak transcription	Small Intestine	intestine
21	chr6:110084400-110094000	Weak transcription	Stomach Mucosa	stomach
22	chr6:110084400-110094200	Weak transcription	HSMM	muscle
23	chr6:110084600-110094000	Weak transcription	Fetal Heart	heart
24	chr6:110085600-110112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:110086400-110104600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:110086600-110093000	Weak transcription	HMEC	breast
27	chr6:110087200-110090400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:110087200-110092800	Strong transcription	Primary T cells from cord blood	blood
29	chr6:110087600-110094000	Weak transcription	HSMMtube	muscle
30	chr6:110087600-110094200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:110087600-110094200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:110087800-110090400	Strong transcription	Fetal Thymus	thymus
33	chr6:110088400-110091400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:110088400-110107600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:110088800-110090400	Strong transcription	Fetal Intestine Large	intestine
36	chr6:110089000-110090400	Strong transcription	Fetal Lung	lung
37	chr6:110089000-110090400	Strong transcription	Lung	lung
38	chr6:110089000-110090400	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:110089000-110090400	Strong transcription	Thymus	Thymus
40	chr6:110089000-110090800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:110089000-110107600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:110089200-110093800	Weak transcription	Left Ventricle	heart
43	chr6:110089400-110090400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
44	chr6:110089400-110090800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:110089400-110111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:110089600-110091600	Weak transcription	Fetal Brain Female	brain
47	chr6:110089600-110094200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:110089600-110108000	Weak transcription	Brain Anterior Caudate	brain
49	chr6:110089600-110111400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:110089600-110115600	Weak transcription	Esophagus	oesophagus

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