Variant report

Variant	rs9386811
Chromosome Location	chr6:109843719-109843720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109837056..109838849-chr6:109842605..109844539,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10872036	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872037	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872038	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1096137	0.84[ASN][1000 genomes]
rs1096141	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1103996	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs11153186	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11153196	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1115978	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12175588	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191099	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12194431	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12209401	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12216333	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1321206	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321208	0.94[CEU][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322815	0.90[CEU][hapmap];0.88[JPT][hapmap]
rs1406955	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17070673	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853030	0.84[EUR][1000 genomes]
rs1923057	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2025149	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2145145	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2884063	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3823234	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4945834	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946985	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946990	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4947005	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4947007	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4947013	1.00[CEU][hapmap]
rs4947014	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs62435962	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6906729	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs6915268	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7757153	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7757895	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7759120	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7764711	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs7772817	0.80[ASN][1000 genomes]
rs7775414	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs829810	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs829811	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs865503	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs866685	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9320293	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320301	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9372213	0.88[JPT][hapmap]
rs9372223	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9374104	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374105	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374111	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374112	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9384712	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9384719	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9386809	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9386815	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386819	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386822	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386828	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386829	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9398210	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9398212	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9400292	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400298	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400302	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480972	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9480980	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487132	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9487161	0.86[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9487181	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487182	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9766863	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109835400-109851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:109835600-109844400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
4	chr6:109839000-109844600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:109839000-109848200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:109842800-109845400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109843400-109844400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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