Variant report

Variant	rs910730
Chromosome Location	chr6:109768295-109768296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109766673..109769201-chr6:109798430..109801986,3	MCF-7	breast:
2	chr6:109739441..109742103-chr6:109765700..109768387,2	MCF-7	breast:
3	chr6:109767345..109770309-chr6:109802803..109805406,2	MCF-7	breast:
4	chr6:109701746..109704787-chr6:109765536..109768393,4	K562	blood:
5	chr6:109756751..109759661-chr6:109767137..109769430,2	MCF-7	breast:
6	chr6:109701777..109705568-chr6:109765713..109769272,5	K562	blood:

Variant related genes	Relation type
ENSG00000112365	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10457192	0.91[CEU][hapmap];0.87[GIH][hapmap];0.80[JPT][hapmap]
rs10457194	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs10457195	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs1046943	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1054607	0.81[MKK][hapmap];0.85[YRI][hapmap]
rs1074765	0.93[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.90[EUR][1000 genomes]
rs1074766	0.93[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.88[EUR][1000 genomes]
rs10872033	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11153171	0.87[CHB][hapmap]
rs11153183	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs11251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754455	0.91[CEU][hapmap];0.84[JPT][hapmap]
rs11755641	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs12194061	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs12197180	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs12198938	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs12199154	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs12212476	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs12214147	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12529733	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs13201430	0.96[CEU][hapmap]
rs13219952	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13220915	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs1406899	0.91[CEU][hapmap];0.81[JPT][hapmap]
rs1476387	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1521907	0.89[EUR][1000 genomes]
rs17070591	0.96[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17070656	0.80[YRI][hapmap]
rs1853330	0.81[EUR][1000 genomes]
rs1885690	0.89[EUR][1000 genomes]
rs1885691	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1980591	0.91[CEU][hapmap]
rs1998811	0.82[EUR][1000 genomes]
rs2024850	0.91[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap]
rs2024853	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2211288	0.91[EUR][1000 genomes]
rs2236084	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2277113	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2277114	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs2884037	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs35146243	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35260632	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3734652	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3757230	0.90[EUR][1000 genomes]
rs3757231	0.91[EUR][1000 genomes]
rs3757235	0.85[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs3778474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3778478	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3799842	0.92[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3818933	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4636056	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4945831	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946970	0.91[EUR][1000 genomes]
rs4946976	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58644322	0.89[EUR][1000 genomes]
rs59597139	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6568587	0.80[YRI][hapmap]
rs6911838	0.84[CHB][hapmap]
rs6914216	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6920372	0.96[CEU][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6920712	0.84[MKK][hapmap];0.85[YRI][hapmap]
rs6925005	0.80[YRI][hapmap]
rs6939548	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6939953	0.89[EUR][1000 genomes]
rs699700	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs729888	0.91[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs730089	0.85[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs7356790	0.80[YRI][hapmap]
rs736830	0.85[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs746794	0.91[EUR][1000 genomes]
rs7748669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751582	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7754650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7755941	0.91[CEU][hapmap];0.83[GIH][hapmap];0.80[EUR][1000 genomes]
rs7768973	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7773950	0.91[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs8465	0.90[EUR][1000 genomes]
rs9320286	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9372213	0.87[GIH][hapmap];0.85[TSI][hapmap]
rs9398202	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9480947	0.96[CEU][hapmap];0.90[YRI][hapmap];0.91[EUR][1000 genomes]
rs9480949	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9480956	0.96[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9480958	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487064	0.84[EUR][1000 genomes]
rs9487066	0.82[EUR][1000 genomes]
rs9487069	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487070	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs9487076	0.90[EUR][1000 genomes]
rs9487084	0.91[EUR][1000 genomes]
rs9487085	0.89[EUR][1000 genomes]
rs9487103	0.93[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs974034	0.93[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.80[YRI][hapmap];0.90[EUR][1000 genomes]
rs9791241	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs910730	CD164	cis	parietal	SCAN
rs910730	FIG4	cis	cerebellum	SCAN
rs910730	AKD1	cis	cerebellum	SCAN
rs910730	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs910730	FIG4	cis	parietal	SCAN
rs910730	SMPD2	cis	parietal	SCAN
rs910730	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs910730	RP11-425D10.10	cis	Whole Blood	GTEx
rs910730	SMPD2	cis	Esophagus Mucosa	GTEx
rs910730	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs910730	MICAL1	cis	Artery Tibial	GTEx
rs910730	AKD1	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109762800-109775800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:109763200-109774400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:109763200-109775600	Weak transcription	Fetal Kidney	kidney
4	chr6:109763200-109775800	Weak transcription	HUVEC	blood vessel
5	chr6:109763400-109768600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:109763400-109770400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:109763400-109775000	Strong transcription	NHLF	lung
8	chr6:109763400-109775200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:109763600-109768400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:109763600-109768400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:109763600-109768400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:109763600-109768400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:109763600-109768600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:109763600-109768600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:109763600-109768800	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr6:109763600-109768800	Strong transcription	Brain Anterior Caudate	brain
17	chr6:109763600-109769400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:109763600-109769600	Weak transcription	Brain Substantia Nigra	brain
19	chr6:109763600-109770000	Strong transcription	NHEK	skin
20	chr6:109763600-109770800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:109763600-109773200	Weak transcription	Fetal Brain Male	brain
22	chr6:109763600-109775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:109763600-109775200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:109763600-109775800	Weak transcription	Right Atrium	heart
25	chr6:109763800-109768400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:109763800-109768400	Strong transcription	Liver	Liver
27	chr6:109763800-109769000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:109763800-109769000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:109763800-109769600	Strong transcription	Fetal Muscle Leg	muscle
30	chr6:109763800-109769800	Strong transcription	Thymus	Thymus
31	chr6:109763800-109770600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:109763800-109770600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:109763800-109770800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:109763800-109771000	Strong transcription	Fetal Intestine Small	intestine
35	chr6:109763800-109774400	Strong transcription	HSMM	muscle
36	chr6:109763800-109774600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:109763800-109774800	Strong transcription	Fetal Stomach	stomach
38	chr6:109763800-109774800	Weak transcription	Small Intestine	intestine
39	chr6:109763800-109775400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:109763800-109775400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:109763800-109775600	Weak transcription	HepG2	liver
42	chr6:109764000-109768400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:109764000-109768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:109764000-109768600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr6:109764000-109768800	Strong transcription	Primary B cells from cord blood	blood
46	chr6:109764000-109768800	Strong transcription	Primary T cells from cord blood	blood
47	chr6:109764000-109769200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:109764000-109774400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr6:109764000-109774600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr6:109764000-109774800	Strong transcription	Fetal Intestine Large	intestine

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