Variant report

Variant	rs13220915
Chromosome Location	chr6:109824826-109824827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:109824817-109824866	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:109824776-109825276	HL-60	blood:	n/a	n/a
3	POLR2A	chr6:109824720-109825278	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109822082..109824887-chr6:109829770..109832005,2	K562	blood:

Variant related genes	Relation type
ENSG00000253037	TF binding region

Extended variants
information (count: 133 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10457192	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10457195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10457203	0.83[EUR][1000 genomes]
rs1046943	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1048203	0.86[CHB][hapmap]
rs10499053	0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1074765	0.87[CEU][hapmap]
rs1074766	0.87[CEU][hapmap]
rs10782162	0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs10782163	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10872034	0.95[ASN][1000 genomes]
rs11153174	0.86[CHB][hapmap]
rs11153175	0.86[CHB][hapmap]
rs11153183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153188	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11153213	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[YRI][hapmap]
rs11251	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs11752791	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11754340	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11967108	0.86[CHB][hapmap]
rs12190920	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs12190996	0.84[ASN][1000 genomes]
rs12191353	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12192268	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs12192776	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12192847	0.85[ASN][1000 genomes]
rs12193719	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194157	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12195904	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12197114	0.86[CHB][hapmap]
rs12197180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12197838	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12197950	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12198938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205140	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205485	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208018	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208933	0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12209691	0.85[ASN][1000 genomes]
rs12210706	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12212476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214639	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12524639	0.86[CHB][hapmap]
rs12528781	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12528822	0.81[CHB][hapmap]
rs12529733	0.84[CEU][hapmap]
rs13191066	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13199109	0.82[EUR][1000 genomes]
rs13199135	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13201430	0.96[CEU][hapmap]
rs13201947	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13201951	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204102	0.82[ASN][1000 genomes]
rs13204500	0.82[ASN][1000 genomes]
rs1321328	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1358998	0.86[CHB][hapmap]
rs1406899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476387	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs1476388	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546980	0.84[ASN][1000 genomes]
rs17070591	0.88[CEU][hapmap]
rs1923725	0.86[CHB][hapmap]
rs1960325	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1980591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1998811	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024853	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148089	0.80[ASN][1000 genomes]
rs2208209	0.86[ASN][1000 genomes]
rs2236084	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs2236582	0.86[CHB][hapmap]
rs2275650	0.81[CHB][hapmap]
rs2277113	0.87[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs2277114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357124	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884037	0.88[CEU][hapmap]
rs35146243	0.83[EUR][1000 genomes]
rs36131450	0.81[ASN][1000 genomes]
rs3734652	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs3757234	0.86[CHB][hapmap]
rs3757235	0.87[CEU][hapmap]
rs3778474	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs3778477	0.85[ASN][1000 genomes]
rs3778478	0.83[EUR][1000 genomes]
rs3799842	0.84[CEU][hapmap]
rs3807005	0.85[ASN][1000 genomes]
rs3899233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4490694	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945833	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946967	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs6568592	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68042406	0.95[ASN][1000 genomes]
rs6906216	0.97[ASN][1000 genomes]
rs6911700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6914498	0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6916579	0.94[ASN][1000 genomes]
rs6920292	0.88[ASN][1000 genomes]
rs6920372	0.88[CEU][hapmap]
rs6926096	0.97[ASN][1000 genomes]
rs6939548	0.83[EUR][1000 genomes]
rs71541003	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs729888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs730089	0.87[CEU][hapmap]
rs7341297	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs736830	0.87[CEU][hapmap]
rs749517	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs752262	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs7748669	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs7754650	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs7755941	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767525	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7768973	0.88[CEU][hapmap]
rs7773095	0.86[CHB][hapmap]
rs7773950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910730	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs9480947	0.88[CEU][hapmap]
rs9480948	0.86[CHB][hapmap]
rs9480956	0.88[CEU][hapmap]
rs9480957	0.86[CHB][hapmap]
rs9487070	0.88[CEU][hapmap]
rs9487100	0.85[CHB][hapmap]
rs9487103	0.87[CEU][hapmap]
rs971434	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs974034	0.87[CEU][hapmap]
rs9791241	0.87[CEU][hapmap];0.83[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs13220915	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs13220915	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs13220915	SMPD2	cis	Whole Blood	GTEx
rs13220915	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs13220915	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109815800-109837200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:109819800-109828200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:109819800-109828200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:109822400-109826000	Enhancers	Placenta	Placenta
5	chr6:109823000-109825000	Enhancers	HSMM	muscle
6	chr6:109823400-109834600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109823800-109828200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:109824000-109825000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:109824000-109825400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:109824400-109825200	Enhancers	HSMMtube	muscle
11	chr6:109824400-109825400	Enhancers	Liver	Liver
12	chr6:109824400-109826200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:109824600-109825000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:109824600-109825200	Bivalent Enhancer	HepG2	liver
15	chr6:109824600-109825400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:109824800-109825000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:109824800-109825000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:109824800-109825000	Enhancers	Fetal Kidney	kidney
19	chr6:109824800-109825000	Enhancers	Fetal Lung	lung
20	chr6:109824800-109825000	Enhancers	Spleen	Spleen
21	chr6:109824800-109825200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:109824800-109825200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:109824800-109825200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:109824800-109825200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:109824800-109825200	Enhancers	NHDF-Ad	bronchial
26	chr6:109824800-109825400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:109824800-109825400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:109824800-109825600	Enhancers	H1 Cell Line	embryonic stem cell

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