Variant report

Variant	rs6920292
Chromosome Location	chr6:109861281-109861282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10457192	0.88[ASN][1000 genomes]
rs10457194	0.88[ASN][1000 genomes]
rs10457195	0.85[ASN][1000 genomes]
rs10499053	0.82[ASN][1000 genomes]
rs10782162	0.84[ASN][1000 genomes]
rs10782163	0.89[ASN][1000 genomes]
rs10872034	0.84[ASN][1000 genomes]
rs11153183	0.88[ASN][1000 genomes]
rs11153188	0.89[ASN][1000 genomes]
rs11752791	0.89[ASN][1000 genomes]
rs11754340	0.86[ASN][1000 genomes]
rs11754455	0.88[ASN][1000 genomes]
rs11755641	0.88[ASN][1000 genomes]
rs12191353	0.85[ASN][1000 genomes]
rs12192776	0.84[ASN][1000 genomes]
rs12193719	0.88[ASN][1000 genomes]
rs12194061	0.89[ASN][1000 genomes]
rs12194157	0.84[ASN][1000 genomes]
rs12197180	0.86[ASN][1000 genomes]
rs12197838	0.83[ASN][1000 genomes]
rs12197950	0.84[ASN][1000 genomes]
rs12198938	0.88[ASN][1000 genomes]
rs12199154	0.88[ASN][1000 genomes]
rs12205485	0.86[ASN][1000 genomes]
rs12208018	0.86[ASN][1000 genomes]
rs12208933	0.83[ASN][1000 genomes]
rs12210706	0.83[ASN][1000 genomes]
rs12212476	0.88[ASN][1000 genomes]
rs12214639	0.88[ASN][1000 genomes]
rs12528781	0.86[ASN][1000 genomes]
rs13191066	0.86[ASN][1000 genomes]
rs13199135	0.88[ASN][1000 genomes]
rs13201947	0.88[ASN][1000 genomes]
rs13201951	0.91[ASN][1000 genomes]
rs13203587	0.88[ASN][1000 genomes]
rs13220915	0.88[ASN][1000 genomes]
rs1406899	0.88[ASN][1000 genomes]
rs1476388	0.89[ASN][1000 genomes]
rs1960325	0.88[ASN][1000 genomes]
rs1980591	0.86[ASN][1000 genomes]
rs1998811	0.88[ASN][1000 genomes]
rs2024849	0.88[ASN][1000 genomes]
rs2024850	0.88[ASN][1000 genomes]
rs2024852	0.88[ASN][1000 genomes]
rs2024853	0.88[ASN][1000 genomes]
rs2208209	0.83[ASN][1000 genomes]
rs2277114	0.88[ASN][1000 genomes]
rs2357124	0.86[ASN][1000 genomes]
rs3899233	0.81[ASN][1000 genomes]
rs4490694	0.88[ASN][1000 genomes]
rs4945833	0.88[ASN][1000 genomes]
rs6568592	0.83[ASN][1000 genomes]
rs68042406	0.84[ASN][1000 genomes]
rs6906216	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6911700	0.81[ASN][1000 genomes]
rs6914498	0.81[ASN][1000 genomes]
rs6916579	0.85[ASN][1000 genomes]
rs6926096	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71541003	0.81[ASN][1000 genomes]
rs729888	0.84[ASN][1000 genomes]
rs7341297	0.82[ASN][1000 genomes]
rs749517	0.89[ASN][1000 genomes]
rs7755941	0.88[ASN][1000 genomes]
rs7767525	0.84[ASN][1000 genomes]
rs7773950	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
2	chr6:109848400-109865600	Weak transcription	Aorta	Aorta
3	chr6:109848400-109870400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:109850800-109870000	Weak transcription	Left Ventricle	heart
5	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea
6	chr6:109859200-109868000	Weak transcription	Spleen	Spleen
7	chr6:109859200-109873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:109860200-109870000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:109860600-109870000	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:109860800-109866400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:109861000-109861600	ZNF genes & repeats	Fetal Thymus	thymus
12	chr6:109861000-109862600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:109861200-109861800	ZNF genes & repeats	Lung	lung
14	chr6:109861200-109870200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links