Variant report

Variant	rs10782163
Chromosome Location	chr6:109854243-109854244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10457192	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10457194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10457195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10457203	0.85[EUR][1000 genomes]
rs1046943	0.88[CEU][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap]
rs1048203	0.86[CHB][hapmap]
rs10499053	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.88[MKK][hapmap];0.86[ASN][1000 genomes]
rs1074765	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs1074766	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs10782162	0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.88[MKK][hapmap];0.94[ASN][1000 genomes]
rs10872034	0.94[ASN][1000 genomes]
rs11153174	0.86[CHB][hapmap]
rs11153175	0.86[CHB][hapmap]
rs11153183	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153188	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11153213	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs11153215	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs11251	0.92[CEU][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap]
rs11752791	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11754340	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11755641	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11967108	0.86[CHB][hapmap]
rs12190920	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs12190996	0.83[ASN][1000 genomes]
rs12191353	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12192268	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs12192776	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12192847	0.85[ASN][1000 genomes]
rs12193719	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12194061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194157	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12195904	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12197114	0.86[CHB][hapmap]
rs12197180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12197838	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12197950	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12201356	0.80[EUR][1000 genomes]
rs12204548	0.92[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs12205140	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12205485	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208018	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208933	0.95[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12209691	0.85[ASN][1000 genomes]
rs12210706	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12212476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12214639	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215077	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[GIH][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs12524639	0.86[CHB][hapmap]
rs12528712	0.82[MKK][hapmap]
rs12528781	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12528822	0.82[CHB][hapmap]
rs13191066	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13199109	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13199135	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13201430	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs13201947	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13201951	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13203587	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13204102	0.83[ASN][1000 genomes]
rs13204500	0.83[ASN][1000 genomes]
rs1321328	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs13220915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1358998	0.86[CHB][hapmap]
rs1406899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1476387	0.88[CEU][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap]
rs1476388	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546980	0.83[ASN][1000 genomes]
rs17070591	0.87[CEU][hapmap]
rs1923725	0.86[CHB][hapmap]
rs1960325	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1998811	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024849	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024852	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024853	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025148	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs2148089	0.81[ASN][1000 genomes]
rs2208209	0.87[ASN][1000 genomes]
rs2236084	0.88[CEU][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap]
rs2236582	0.86[CHB][hapmap]
rs2275650	0.82[CHB][hapmap]
rs2277113	0.88[CEU][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap]
rs2277114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2357124	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2884037	0.88[CEU][hapmap]
rs36131450	0.82[ASN][1000 genomes]
rs3734652	0.88[CEU][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap]
rs3757234	0.86[CHB][hapmap]
rs3757235	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs3778474	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs3778477	0.84[ASN][1000 genomes]
rs3799842	0.84[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap]
rs3799845	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs3799849	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap]
rs3807005	0.85[ASN][1000 genomes]
rs3899233	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4490694	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945833	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946967	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs6568592	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68042406	0.94[ASN][1000 genomes]
rs6906216	0.97[ASN][1000 genomes]
rs6911700	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6914498	0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6916579	0.95[ASN][1000 genomes]
rs6920292	0.89[ASN][1000 genomes]
rs6920372	0.88[CEU][hapmap]
rs6926096	0.97[ASN][1000 genomes]
rs71541003	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs729888	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs730089	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs7341297	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs736830	0.88[CEU][hapmap];0.81[GIH][hapmap]
rs749517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs752262	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7748669	0.92[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap]
rs7754650	0.92[CEU][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap]
rs7755941	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7767525	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7768973	0.87[CEU][hapmap]
rs7773095	0.86[CHB][hapmap]
rs7773950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs910730	0.91[CEU][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap]
rs9480947	0.88[CEU][hapmap]
rs9480948	0.86[CHB][hapmap]
rs9480956	0.88[CEU][hapmap]
rs9480957	0.86[CHB][hapmap]
rs9487070	0.88[CEU][hapmap]
rs9487100	0.86[CHB][hapmap]
rs9487103	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs971434	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs974034	0.88[CEU][hapmap];0.80[GIH][hapmap]
rs9791241	0.88[CEU][hapmap];0.87[GIH][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs10782163	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs10782163	SMPD2	cis	parietal	SCAN
rs10782163	PDSS2	cis	cerebellum	SCAN
rs10782163	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs10782163	FIG4	cis	parietal	SCAN
rs10782163	AKD1	cis	lymphoblastoid	seeQTL
rs10782163	CD164	cis	parietal	SCAN
rs10782163	AKD1	cis	parietal	SCAN
rs10782163	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs10782163	FIG4	cis	cerebellum	SCAN
rs10782163	AKD1	cis	cerebellum	SCAN
rs10782163	SMPD2	cis	Whole Blood	GTEx
rs10782163	RP11-425D10.10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
2	chr6:109848400-109865600	Weak transcription	Aorta	Aorta
3	chr6:109848400-109870400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:109850800-109870000	Weak transcription	Left Ventricle	heart
5	chr6:109851400-109854400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea

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