Variant report

Variant	rs11153174
Chromosome Location	chr6:109674055-109674056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
2	chr6:109664466..109666759-chr6:109674016..109675945,2	MCF-7	breast:
3	chr6:109660514..109663248-chr6:109671174..109674117,2	K562	blood:
4	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
5	chr6:109673118..109675059-chr6:109773083..109775082,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135596	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10080429	0.91[EUR][1000 genomes]
rs1040284	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10457194	0.86[CHB][hapmap]
rs10457195	0.86[CHB][hapmap]
rs1048203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10782161	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782162	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs10872032	0.95[EUR][1000 genomes]
rs10872034	0.83[EUR][1000 genomes]
rs11153171	0.87[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs11153175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153176	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153177	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153180	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153181	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11153183	0.86[CHB][hapmap]
rs11753645	0.81[CEU][hapmap]
rs11754455	0.86[CHB][hapmap]
rs11967108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12190920	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12190996	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12192847	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12193493	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12194061	0.86[CHB][hapmap]
rs12197114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12197180	0.86[CHB][hapmap]
rs12198938	0.86[CHB][hapmap]
rs12199154	0.86[CHB][hapmap]
rs12206928	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12209691	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12212476	0.86[CHB][hapmap]
rs12213313	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12524273	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12524639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12528712	0.85[CEU][hapmap]
rs12528822	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13195517	0.85[CEU][hapmap]
rs13199519	0.81[YRI][hapmap]
rs13203252	0.84[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs13212766	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13220915	0.86[CHB][hapmap]
rs1322816	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1358997	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1358998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1406899	0.86[CHB][hapmap]
rs1546980	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1590306	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17070580	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs1923725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2024850	0.86[CHB][hapmap]
rs2236582	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275650	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2277114	0.86[CHB][hapmap]
rs34202013	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35056702	0.92[EUR][1000 genomes]
rs36035949	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36099706	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778475	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778477	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3799835	0.82[CEU][hapmap]
rs3799839	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3807005	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3818934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59056467	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59906308	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68042406	0.83[EUR][1000 genomes]
rs6911838	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs6920962	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs6929023	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7372	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs752262	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755941	0.90[CHB][hapmap]
rs7773095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7773950	0.86[CHB][hapmap]
rs9320287	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs9480933	0.95[EUR][1000 genomes]
rs9480948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9480951	0.92[EUR][1000 genomes]
rs9480953	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs9480955	0.92[EUR][1000 genomes]
rs9480957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487068	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9487094	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs9487095	0.92[EUR][1000 genomes]
rs9487097	0.87[EUR][1000 genomes]
rs9487098	0.88[EUR][1000 genomes]
rs9487100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9885646	0.95[CEU][hapmap];0.92[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11153174	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs11153174	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs11153174	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs11153174	MICAL1	Cis_1M	lymphoblastoid	RTeQTL
rs11153174	SMPD2	cis	Whole Blood	GTEx

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
5	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
6	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
12	chr6:109666400-109675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:109668000-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:109668600-109674800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:109669600-109677000	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:109669600-109677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:109669800-109677200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:109670800-109674400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr6:109671000-109677800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:109671200-109677000	Weak transcription	Aorta	Aorta
23	chr6:109671200-109677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:109671200-109680200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:109671200-109681400	Weak transcription	Brain Anterior Caudate	brain
26	chr6:109671400-109674400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:109671400-109675000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:109671400-109675000	Weak transcription	Liver	Liver
29	chr6:109671400-109675000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:109671400-109675200	Weak transcription	Ovary	ovary
31	chr6:109671400-109675400	Weak transcription	Osteobl	bone
32	chr6:109671400-109675600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:109671400-109677200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:109671400-109677200	Weak transcription	A549	lung
35	chr6:109671400-109677600	Weak transcription	HepG2	liver
36	chr6:109671400-109677800	Weak transcription	Fetal Lung	lung
37	chr6:109671600-109676400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:109671600-109677000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:109671600-109678200	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:109672000-109674200	Enhancers	Fetal Intestine Small	intestine
41	chr6:109672000-109674600	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr6:109672000-109675600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:109672000-109683000	Weak transcription	Esophagus	oesophagus
44	chr6:109672200-109675000	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:109672200-109677000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:109672600-109677400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:109672600-109677800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:109672800-109675000	Weak transcription	Fetal Thymus	thymus
49	chr6:109672800-109675600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:109672800-109677200	Weak transcription	Lung	lung

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