Variant report

Variant	rs9487068
Chromosome Location	chr6:109671845-109671846
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109663736..109666445-chr6:109669637..109672220,3	K562	blood:
2	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
3	chr6:109668992..109672376-chr6:109675520..109680148,6	K562	blood:
4	chr6:109415919..109418323-chr6:109670893..109672500,2	MCF-7	breast:
5	chr6:109670785..109672543-chr6:109675154..109677381,2	MCF-7	breast:
6	chr6:109669515..109674044-chr6:109702916..109706265,4	K562	blood:
7	chr6:109660514..109663248-chr6:109671174..109674117,2	K562	blood:
8	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
9	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
10	chr6:109669590..109673452-chr6:109701898..109703889,4	MCF-7	breast:
11	chr6:109659815..109666445-chr6:109666719..109672363,9	K562	blood:
12	chr6:109658047..109662027-chr6:109669336..109672001,4	MCF-7	breast:
13	chr6:109667528..109670285-chr6:109670801..109673728,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000080546	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10080429	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1040284	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10457190	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1048203	0.94[EUR][1000 genomes]
rs10782161	0.94[EUR][1000 genomes]
rs10782162	0.81[EUR][1000 genomes]
rs10872032	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10872034	0.81[EUR][1000 genomes]
rs11153171	0.86[EUR][1000 genomes]
rs11153174	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153175	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153176	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153177	0.94[EUR][1000 genomes]
rs11153180	0.94[EUR][1000 genomes]
rs11153181	0.94[EUR][1000 genomes]
rs11967108	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12190920	0.85[EUR][1000 genomes]
rs12190996	0.84[EUR][1000 genomes]
rs12192847	0.85[EUR][1000 genomes]
rs12193493	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12197114	0.94[EUR][1000 genomes]
rs12206928	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12209691	0.85[EUR][1000 genomes]
rs12213313	0.94[EUR][1000 genomes]
rs12524273	0.96[EUR][1000 genomes]
rs12524639	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12528822	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13212766	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322816	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1358997	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1358998	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1546980	0.88[EUR][1000 genomes]
rs1590306	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17070580	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1923725	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2236582	0.93[EUR][1000 genomes]
rs2275650	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34202013	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35056702	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36035949	0.91[EUR][1000 genomes]
rs36099706	0.94[EUR][1000 genomes]
rs3757234	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3778475	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3778477	0.87[EUR][1000 genomes]
rs3799839	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3807005	0.85[EUR][1000 genomes]
rs3818934	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59056467	0.81[EUR][1000 genomes]
rs59906308	0.92[EUR][1000 genomes]
rs68042406	0.81[EUR][1000 genomes]
rs6920962	0.85[EUR][1000 genomes]
rs6929023	0.96[EUR][1000 genomes]
rs7372	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs752262	0.88[EUR][1000 genomes]
rs7773095	0.94[EUR][1000 genomes]
rs9320287	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480933	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480948	0.94[EUR][1000 genomes]
rs9480951	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9480953	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480955	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480957	0.93[EUR][1000 genomes]
rs9487094	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487095	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487097	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9487098	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487100	0.94[EUR][1000 genomes]
rs9885646	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9487068	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs9487068	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs9487068	SMPD2	cis	Whole Blood	GTEx
rs9487068	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs9487068	MICAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
5	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
6	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109664200-109672800	Weak transcription	HSMM	muscle
10	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
13	chr6:109666400-109675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:109668000-109673800	Enhancers	Stomach Mucosa	stomach
15	chr6:109668000-109674000	Enhancers	Fetal Intestine Large	intestine
16	chr6:109668000-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109668600-109674800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:109669000-109674000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:109669400-109672600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:109669400-109673800	Enhancers	Colonic Mucosa	Colon
22	chr6:109669600-109677000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:109669600-109677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:109669800-109672000	Weak transcription	Small Intestine	intestine
25	chr6:109669800-109672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:109669800-109672600	Weak transcription	Primary B cells from cord blood	blood
27	chr6:109669800-109677200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:109670200-109673000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:109670400-109672200	Enhancers	Fetal Heart	heart
30	chr6:109670400-109673200	Enhancers	Primary hematopoietic stem cells	blood
31	chr6:109670400-109674000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:109670600-109672200	Enhancers	Right Atrium	heart
33	chr6:109670600-109672200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:109670600-109672400	Enhancers	NHDF-Ad	bronchial
35	chr6:109670600-109673200	Enhancers	Pancreas	Pancrea
36	chr6:109670800-109672200	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:109670800-109674400	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr6:109671000-109672000	Enhancers	Esophagus	oesophagus
39	chr6:109671000-109672000	Enhancers	Placenta	Placenta
40	chr6:109671000-109672000	Enhancers	Left Ventricle	heart
41	chr6:109671000-109672000	Enhancers	Spleen	Spleen
42	chr6:109671000-109672600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:109671000-109672800	Enhancers	Lung	lung
44	chr6:109671000-109673600	Enhancers	Gastric	stomach
45	chr6:109671000-109677800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:109671200-109672000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr6:109671200-109672400	Weak transcription	HMEC	breast
49	chr6:109671200-109672600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:109671200-109677000	Weak transcription	Aorta	Aorta

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