Variant report

Variant	rs6920962
Chromosome Location	chr6:109724490-109724491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109716495..109718176-chr6:109722543..109725492,2	K562	blood:
2	chr6:109722698..109724840-chr6:109727938..109730265,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10080429	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1040284	0.84[EUR][1000 genomes]
rs10457190	0.83[EUR][1000 genomes]
rs1046943	0.81[YRI][hapmap]
rs1048203	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1074765	0.91[CHB][hapmap]
rs1074766	0.91[CHB][hapmap]
rs10782161	0.85[EUR][1000 genomes]
rs10782162	0.82[CEU][hapmap]
rs10872032	0.86[EUR][1000 genomes]
rs11153171	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11153174	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11153175	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs11153176	0.84[EUR][1000 genomes]
rs11153177	0.85[EUR][1000 genomes]
rs11153180	0.85[EUR][1000 genomes]
rs11153181	0.85[EUR][1000 genomes]
rs11967108	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs12190920	0.87[CEU][hapmap]
rs12193493	0.84[EUR][1000 genomes]
rs12197114	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs12206928	0.82[EUR][1000 genomes]
rs12208933	0.83[CEU][hapmap]
rs12213313	0.85[EUR][1000 genomes]
rs12524273	0.85[EUR][1000 genomes]
rs12524639	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs12528822	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs12529733	0.86[CHB][hapmap]
rs13212766	0.83[EUR][1000 genomes]
rs1322816	0.84[EUR][1000 genomes]
rs1358997	0.85[EUR][1000 genomes]
rs1358998	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1590306	0.84[EUR][1000 genomes]
rs17070580	0.91[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17070591	0.96[CHB][hapmap]
rs1923725	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2236084	0.81[YRI][hapmap]
rs2236582	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2275650	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2277113	0.86[YRI][hapmap]
rs2884037	0.95[CHB][hapmap]
rs34202013	0.83[EUR][1000 genomes]
rs35056702	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36035949	0.86[EUR][1000 genomes]
rs36099706	0.85[EUR][1000 genomes]
rs3734652	0.81[YRI][hapmap]
rs3757234	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs3757235	0.91[CHB][hapmap];0.86[YRI][hapmap]
rs3778475	0.84[EUR][1000 genomes]
rs3799839	0.85[EUR][1000 genomes]
rs3818934	0.83[EUR][1000 genomes]
rs59906308	0.84[EUR][1000 genomes]
rs6911838	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs6920372	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs6929023	0.85[EUR][1000 genomes]
rs730089	0.91[CHB][hapmap];0.86[YRI][hapmap]
rs736830	0.91[CHB][hapmap];0.86[YRI][hapmap]
rs7372	0.84[EUR][1000 genomes]
rs7768973	0.92[CHB][hapmap]
rs7773095	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs9320287	0.91[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9480933	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9480947	0.92[CHB][hapmap];0.88[YRI][hapmap]
rs9480948	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs9480951	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9480953	0.91[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9480955	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9480956	0.96[CHB][hapmap];0.80[YRI][hapmap]
rs9480957	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs9487068	0.85[EUR][1000 genomes]
rs9487070	0.92[CHB][hapmap]
rs9487094	0.91[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9487095	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9487097	0.86[EUR][1000 genomes]
rs9487098	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487100	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs9487103	0.91[CHB][hapmap]
rs974034	0.91[CHB][hapmap]
rs9791241	0.81[YRI][hapmap]
rs9885646	0.91[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6920962	SMPD2	cis	Whole Blood	GTEx
rs6920962	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs6920962	MICAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:109711800-109725000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
6	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
8	chr6:109722000-109725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:109723400-109728000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:109724200-109725200	Weak transcription	NHEK	skin
11	chr6:109724200-109725400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:109724400-109727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:109724400-109750400	Weak transcription	Ovary	ovary

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