Variant report

Variant	rs13212766
Chromosome Location	chr6:109705431-109705432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:43)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:43 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:109705374-109705890	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:109705152-109706009	HepG2	liver:	n/a	n/a
3	EP300	chr6:109705319-109706032	HepG2	liver:	n/a	n/a
4	FOXA1	chr6:109705158-109706031	HepG2	liver:	n/a	n/a
5	HDAC2	chr6:109705354-109705979	HepG2	liver:	n/a	chr6:109705746-109705760
6	POLR2A	chr6:109702256-109706422	HepG2	liver:	n/a	n/a
7	NFIC	chr6:109705358-109705995	HepG2	liver:	n/a	n/a
8	FOXA2	chr6:109705345-109705990	HepG2	liver:	n/a	n/a
9	EP300	chr6:109705245-109706049	HepG2	liver:	n/a	n/a
10	BHLHE40	chr6:109702987-109705919	HepG2	liver:	n/a	chr6:109703691-109703712 chr6:109703695-109703708 chr6:109703696-109703705 chr6:109703697-109703706 chr6:109703697-109703706
11	SIN3AK20	chr6:109705425-109706235	MCF-7	breast:	n/a	n/a
12	TEAD4	chr6:109705309-109706009	HepG2	liver:	n/a	n/a
13	NFIC	chr6:109705349-109705998	HepG2	liver:	n/a	n/a
14	EP300	chr6:109705392-109706067	K562	blood:	n/a	chr6:109706047-109706056
15	CEBPD	chr6:109705419-109706117	K562	blood:	n/a	n/a
16	SP1	chr6:109705173-109706047	HepG2	liver:	n/a	n/a
17	MYC	chr6:109705314-109705947	K562	blood:	n/a	n/a
18	GATA3	chr6:109705223-109706227	MCF-7	breast:	n/a	chr6:109706045-109706055
19	ELK4	chr6:109705424-109705550	Hela-S3	cervix:	n/a	n/a
20	FOXA1	chr6:109705335-109706017	HepG2	liver:	n/a	n/a
21	FOXA2	chr6:109705101-109705969	HepG2	liver:	n/a	n/a
22	RCOR1	chr6:109705294-109706019	K562	blood:	n/a	n/a
23	GATA1	chr6:109705267-109707231	K562	blood:	n/a	chr6:109706045-109706055 chr6:109706324-109706332
24	TBP	chr6:109705308-109705996	HepG2	liver:	n/a	n/a
25	CTCF	chr6:109705420-109705570	HVMF	connective:	n/a	n/a
26	HDAC2	chr6:109705360-109705785	HepG2	liver:	n/a	chr6:109705746-109705760
27	CTCF	chr6:109705320-109705470	GM12873	blood:	n/a	n/a
28	FOXA1	chr6:109704899-109705973	HepG2	liver:	n/a	n/a
29	ARID3A	chr6:109705264-109706118	HepG2	liver:	n/a	n/a
30	CEBPB	chr6:109705396-109706075	K562	blood:	n/a	n/a
31	JUN	chr6:109705357-109706403	K562	blood:	n/a	n/a
32	KAP1	chr6:109705431-109706503	HEK293	kidney:	n/a	n/a
33	TBL1XR1	chr6:109705376-109706086	K562	blood:	n/a	n/a
34	MAX	chr6:109704799-109705556	K562	blood:	n/a	n/a
35	MYBL2	chr6:109705207-109706025	HepG2	liver:	n/a	n/a
36	HEY1	chr6:109705171-109705623	HepG2	liver:	n/a	n/a
37	POLR2A	chr6:109704831-109705464	HepG2	liver:	n/a	n/a
38	POLR2A	chr6:109702288-109706040	Hela-S3	cervix:	n/a	n/a
39	TEAD4	chr6:109705267-109706148	K562	blood:	n/a	n/a
40	JUND	chr6:109705271-109706326	K562	blood:	n/a	chr6:109705836-109705847
41	CBX3	chr6:109705415-109706065	K562	blood:	n/a	n/a
42	ZNF384	chr6:109705254-109706012	K562	blood:	n/a	n/a
43	BHLHE40	chr6:109703080-109705966	K562	blood:	n/a	chr6:109703691-109703712 chr6:109703695-109703708 chr6:109703696-109703705 chr6:109703697-109703706 chr6:109703697-109703706

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109704505..109707009-chr6:109717499..109719402,2	K562	blood:
2	chr6:109414172..109420012-chr6:109700263..109705604,12	MCF-7	breast:
3	chr6:109703058..109705958-chr6:109774873..109777253,2	MCF-7	breast:
4	chr6:109704063..109706352-chr6:109779634..109782625,2	K562	blood:
5	chr6:109554938..109560362-chr6:109702019..109707132,8	K562	blood:
6	chr6:109702383..109706611-chr6:109760202..109762116,4	K562	blood:
7	chr6:109508691..109509678-chr6:109704160..109705571,8	K562	blood:
8	chr6:109414769..109417470-chr6:109702121..109705671,6	MCF-7	breast:
9	chr6:108878269..108881845-chr6:109702991..109706559,3	K562	blood:
10	chr6:109414834..109419474-chr6:109701430..109708028,12	K562	blood:
11	chr6:109702597..109705942-chr6:109803330..109806291,3	K562	blood:
12	chr6:109538062..109539919-chr6:109704184..109705919,2	MCF-7	breast:
13	chr6:109702022..109707287-chr6:109760251..109763953,8	MCF-7	breast:
14	chr6:109702065..109705528-chr6:109760483..109765471,8	MCF-7	breast:
15	chr6:109486803..109488708-chr6:109704418..109707103,2	K562	blood:
16	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:
17	chr6:109655906..109657888-chr6:109704204..109706097,2	K562	blood:
18	chr6:109414590..109417855-chr6:109700035..109707147,9	K562	blood:
19	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
20	chr6:109659415..109661984-chr6:109702237..109705687,4	MCF-7	breast:
21	chr6:108879178..108880841-chr6:109704177..109706752,2	MCF-7	breast:

No data

Variant related genes	Relation type
CD164	TF binding region
ENSG00000135587	Chromatin interaction
ENSG00000112365	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000135596	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000118689	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000243587	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10080429	0.90[EUR][1000 genomes]
rs1040284	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10457190	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1048203	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10782161	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782162	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10872032	0.92[EUR][1000 genomes]
rs10872034	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11153171	0.84[EUR][1000 genomes]
rs11153174	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11153175	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11153176	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153177	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153180	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153181	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967108	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12190920	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190996	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192847	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12193493	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12197114	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12206928	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12209691	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12213313	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12524273	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524639	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528822	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322816	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1358997	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1358998	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546980	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1590306	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17070580	0.91[EUR][1000 genomes]
rs1923725	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2236582	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275650	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34202013	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35056702	0.91[EUR][1000 genomes]
rs36035949	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36099706	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3757234	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778475	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3778477	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3799839	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3807005	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3818934	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59056467	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59906308	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68042406	0.84[EUR][1000 genomes]
rs6920962	0.83[EUR][1000 genomes]
rs6929023	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752262	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773095	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320287	0.91[EUR][1000 genomes]
rs9480933	0.92[EUR][1000 genomes]
rs9480948	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480951	0.91[EUR][1000 genomes]
rs9480953	0.91[EUR][1000 genomes]
rs9480955	0.91[EUR][1000 genomes]
rs9480957	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9487068	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9487094	0.91[EUR][1000 genomes]
rs9487095	0.91[EUR][1000 genomes]
rs9487097	0.86[EUR][1000 genomes]
rs9487098	0.87[EUR][1000 genomes]
rs9487100	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9885646	0.91[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs13212766	RP11-425D10.10	cis	Esophagus Mucosa	GTEx
rs13212766	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs13212766	SMPD2	cis	Whole Blood	GTEx
rs13212766	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs13212766	MICAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109700200-109705600	Active TSS	Stomach Smooth Muscle	stomach
2	chr6:109700600-109705800	Active TSS	Ovary	ovary
3	chr6:109700600-109706000	Active TSS	Colonic Mucosa	Colon
4	chr6:109700600-109706200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:109700800-109705800	Active TSS	Psoas Muscle	Psoas
6	chr6:109701400-109705600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:109701600-109705600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:109701600-109705800	Active TSS	HSMMtube	muscle
9	chr6:109701800-109705600	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr6:109703800-109707000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:109704400-109706400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr6:109704600-109705600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:109704600-109705800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:109704600-109705800	Weak transcription	Gastric	stomach
15	chr6:109704600-109705800	Weak transcription	Small Intestine	intestine
16	chr6:109704600-109706000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:109704600-109706000	Flanking Active TSS	Liver	Liver
18	chr6:109704600-109706200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr6:109704600-109706200	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr6:109704600-109706400	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr6:109704600-109706400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:109704600-109706400	Flanking Active TSS	Hela-S3	cervix
23	chr6:109704600-109706400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr6:109704600-109706600	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:109704600-109706600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:109704600-109706800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:109704600-109710800	Weak transcription	Aorta	Aorta
28	chr6:109704800-109705600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr6:109704800-109705600	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr6:109704800-109705800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:109704800-109705800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:109704800-109705800	Enhancers	Fetal Heart	heart
33	chr6:109704800-109706000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:109704800-109706200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:109704800-109706200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:109704800-109706200	Enhancers	Brain Angular Gyrus	brain
37	chr6:109704800-109706200	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr6:109704800-109706600	Flanking Active TSS	K562	blood
39	chr6:109705000-109705800	Enhancers	Primary T cells from cord blood	blood
40	chr6:109705000-109705800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:109705000-109705800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:109705000-109705800	Active TSS	HepG2	liver
43	chr6:109705000-109706000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:109705000-109706000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:109705000-109706000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:109705000-109706200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:109705000-109706200	Enhancers	Fetal Lung	lung
48	chr6:109705000-109706200	Enhancers	HSMM	muscle
49	chr6:109705000-109706200	Enhancers	HUVEC	blood vessel
50	chr6:109705000-109706200	Enhancers	NH-A	brain

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