Variant report

Variant	rs2208210
Chromosome Location	chr6:109903029-109903030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 194 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:189)

rs_ID	r²[population]
rs10457201	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10872035	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872041	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10872047	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10872051	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10872052	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1096139	0.87[EUR][1000 genomes]
rs1096140	0.85[EUR][1000 genomes]
rs1096142	0.87[EUR][1000 genomes]
rs1102924	0.81[EUR][1000 genomes]
rs11153193	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11153194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11153195	0.82[EUR][1000 genomes]
rs11153200	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11153201	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1115977	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11966009	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11968485	0.88[EUR][1000 genomes]
rs12204769	0.91[EUR][1000 genomes]
rs12207793	0.81[EUR][1000 genomes]
rs12211805	0.87[EUR][1000 genomes]
rs12215867	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12524352	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12663674	0.87[EUR][1000 genomes]
rs1321327	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1358759	0.86[EUR][1000 genomes]
rs1406957	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1474959	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1570011	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1570012	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1570013	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1575108	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1575109	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1590187	0.86[EUR][1000 genomes]
rs1885425	0.86[EUR][1000 genomes]
rs1967725	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1969710	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1969711	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1985123	0.86[EUR][1000 genomes]
rs1998812	0.87[EUR][1000 genomes]
rs2016207	0.88[EUR][1000 genomes]
rs2064820	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2093097	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2145144	0.85[EUR][1000 genomes]
rs2357123	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2357125	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2357128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2357129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2357130	0.89[EUR][1000 genomes]
rs2884101	0.89[EUR][1000 genomes]
rs4454170	0.89[EUR][1000 genomes]
rs4523125	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4591898	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4607459	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4945835	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946986	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4946987	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4946989	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4946991	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4946992	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4946993	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946996	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4946999	0.89[EUR][1000 genomes]
rs4947003	0.88[EUR][1000 genomes]
rs4947009	0.81[EUR][1000 genomes]
rs62435981	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6568580	0.86[EUR][1000 genomes]
rs6568590	0.88[EUR][1000 genomes]
rs6568593	0.82[EUR][1000 genomes]
rs6568594	0.86[EUR][1000 genomes]
rs6568595	0.88[EUR][1000 genomes]
rs6568596	0.86[EUR][1000 genomes]
rs6568598	0.84[EUR][1000 genomes]
rs6568600	0.85[EUR][1000 genomes]
rs6568602	0.84[EUR][1000 genomes]
rs6568603	0.83[EUR][1000 genomes]
rs67715693	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6910388	0.86[AMR][1000 genomes]
rs6916239	0.87[EUR][1000 genomes]
rs6917999	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6918140	0.86[EUR][1000 genomes]
rs6922784	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6924269	0.86[EUR][1000 genomes]
rs6929823	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6938499	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71541004	0.83[EUR][1000 genomes]
rs731879	0.88[EUR][1000 genomes]
rs7450970	0.88[EUR][1000 genomes]
rs7453835	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7454678	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7454858	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7744981	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7745406	0.80[EUR][1000 genomes]
rs7745469	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7749386	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7749910	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7751458	0.85[EUR][1000 genomes]
rs7754118	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7754606	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7761008	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7764783	0.88[EUR][1000 genomes]
rs7765265	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs829813	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs829814	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs829815	0.88[EUR][1000 genomes]
rs829816	0.88[EUR][1000 genomes]
rs829818	0.88[EUR][1000 genomes]
rs853544	0.86[EUR][1000 genomes]
rs9320294	0.87[EUR][1000 genomes]
rs9320295	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9320296	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9320299	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9320304	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9320305	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9372216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9372221	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9372222	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9374092	0.85[EUR][1000 genomes]
rs9374094	0.83[EUR][1000 genomes]
rs9374095	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9374097	0.89[EUR][1000 genomes]
rs9374098	0.86[EUR][1000 genomes]
rs9374099	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9374108	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9374110	0.84[EUR][1000 genomes]
rs9374113	0.88[EUR][1000 genomes]
rs9374114	0.88[EUR][1000 genomes]
rs9384713	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9384715	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9384716	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9384717	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9384720	0.88[EUR][1000 genomes]
rs9386812	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9386813	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9386816	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9386818	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386820	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9386823	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386824	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386825	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386826	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9398204	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9398206	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9400288	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9400291	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400293	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400294	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400295	0.89[EUR][1000 genomes]
rs9400301	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400307	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9400310	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9400312	0.88[EUR][1000 genomes]
rs9400313	0.88[EUR][1000 genomes]
rs9400314	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9400315	0.88[EUR][1000 genomes]
rs9400316	0.88[EUR][1000 genomes]
rs942923	0.86[EUR][1000 genomes]
rs942924	0.87[EUR][1000 genomes]
rs9480973	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9480974	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9480976	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9480982	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9480984	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9480985	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9480986	0.88[EUR][1000 genomes]
rs9480987	0.84[EUR][1000 genomes]
rs9480991	0.88[EUR][1000 genomes]
rs9487141	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9487148	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9487152	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9487153	0.85[EUR][1000 genomes]
rs9487156	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9487160	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9487164	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9487168	0.82[EUR][1000 genomes]
rs9487169	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9487170	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9487171	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9487172	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9487175	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9487176	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9487178	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9487179	0.86[EUR][1000 genomes]
rs9487180	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9487183	0.86[EUR][1000 genomes]
rs971432	0.88[EUR][1000 genomes]
rs971433	0.88[EUR][1000 genomes]
rs9986423	0.88[EUR][1000 genomes]
rs9986507	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2208210	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs2208210	SMPD2	cis	Whole Blood	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109878800-109903600	Weak transcription	Psoas Muscle	Psoas
2	chr6:109879000-109903800	Weak transcription	Thymus	Thymus
3	chr6:109879000-109906000	Weak transcription	Left Ventricle	heart
4	chr6:109879000-109917400	Weak transcription	Aorta	Aorta
5	chr6:109886000-109910600	Weak transcription	Primary B cells from cord blood	blood
6	chr6:109900800-109906000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:109903000-109903200	Strong transcription	Primary T cells from cord blood	blood

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