Variant report

Variant	rs9400286
Chromosome Location	chr6:109811260-109811261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109802819..109804460-chr6:109810914..109812722,2	K562	blood:

Variant related genes	Relation type
ENSG00000112365	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10080533	0.89[EUR][1000 genomes]
rs10434873	0.89[EUR][1000 genomes]
rs11505167	0.89[EUR][1000 genomes]
rs1303981	0.89[EUR][1000 genomes]
rs17070656	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2076929	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2275651	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60640103	0.89[EUR][1000 genomes]
rs6568587	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6900091	0.89[EUR][1000 genomes]
rs6917383	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6917713	0.89[EUR][1000 genomes]
rs6925005	1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs6932271	0.89[EUR][1000 genomes]
rs7356790	1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs7740192	0.89[EUR][1000 genomes]
rs7743159	0.89[EUR][1000 genomes]
rs7749605	0.89[EUR][1000 genomes]
rs7753555	0.89[EUR][1000 genomes]
rs7765916	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7767805	1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs7768577	0.89[EUR][1000 genomes]
rs927127	0.89[EUR][1000 genomes]
rs9320289	0.89[EUR][1000 genomes]
rs9320292	0.89[EUR][1000 genomes]
rs9372219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9374089	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9374106	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386805	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386807	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386810	0.89[EUR][1000 genomes]
rs9386817	0.89[EUR][1000 genomes]
rs9386833	0.89[EUR][1000 genomes]
rs9398200	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9398205	0.89[EUR][1000 genomes]
rs9400279	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400299	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9400306	0.86[ASN][1000 genomes]
rs9480969	0.89[EUR][1000 genomes]
rs9480990	0.89[EUR][1000 genomes]
rs9487186	0.89[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109804400-109814200	Weak transcription	Gastric	stomach
2	chr6:109805000-109817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:109805400-109812000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:109805600-109812400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:109806000-109811400	Weak transcription	Dnd41	blood
6	chr6:109806200-109812200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:109806800-109812200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:109807400-109812800	Weak transcription	Placenta	Placenta
9	chr6:109809600-109812600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:109809800-109811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:109811200-109812400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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