Variant report

Variant	rs2275651
Chromosome Location	chr6:109701056-109701057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr6:109700981-109701256	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:109685661-109704818	K562	blood:	n/a	n/a
3	GATA3	chr6:109700927-109701276	SH-SY5Y	brain:	n/a	n/a
4	GATA3	chr6:109700757-109701403	SK-N-SH	brain:	n/a	n/a
5	CTCF	chr6:109701020-109701170	Caco-2	colon:	n/a	n/a
6	TBL1XR1	chr6:109700742-109703004	K562	blood:	n/a	n/a
7	GATA3	chr6:109700837-109701195	T-47D	breast:	n/a	n/a
8	CHD1	chr6:109700488-109705195	IMR90	lung:	n/a	n/a
9	FOXA1	chr6:109700992-109701154	T-47D	breast:	n/a	n/a
10	GATA3	chr6:109700704-109701284	T-47D	breast:	n/a	n/a
11	GATA3	chr6:109700688-109701531	SK-N-SH	brain:	n/a	n/a
12	MXI1	chr6:109700825-109705301	SK-N-SH	brain:	n/a	chr6:109704028-109704037 chr6:109704235-109704244 chr6:109704237-109704246 chr6:109703696-109703705
13	FOXA1	chr6:109700908-109701131	T-47D	breast:	n/a	n/a
14	MXI1	chr6:109700978-109705291	IMR90	lung:	n/a	chr6:109704028-109704037 chr6:109704235-109704244 chr6:109704237-109704246 chr6:109703696-109703705

No.	Distal block	Cell Line	Cell type
1	chr6:109414172..109420012-chr6:109700263..109705604,12	MCF-7	breast:
2	chr6:109414759..109417179-chr6:109698567..109701300,2	MCF-7	breast:
3	chr6:109699708..109703613-chr6:109762807..109765058,4	K562	blood:
4	chr16:84538181..84538979-chr6:109700600..109701443,2	HCT-116	colon:
5	chr6:109556321..109558385-chr6:109699289..109701143,2	K562	blood:
6	chr6:109485631..109488192-chr6:109700352..109702464,2	K562	blood:
7	chr6:109414590..109417855-chr6:109700035..109707147,9	K562	blood:
8	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
9	chr6:109330539..109333281-chr6:109699482..109701455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260273	TF binding region
ENSG00000080546	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000140950	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000243587	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10080533	0.81[EUR][1000 genomes]
rs10434873	0.81[EUR][1000 genomes]
rs11505167	0.81[EUR][1000 genomes]
rs1303981	0.81[EUR][1000 genomes]
rs17070656	0.81[EUR][1000 genomes]
rs60640103	0.81[EUR][1000 genomes]
rs6917713	0.81[EUR][1000 genomes]
rs6932271	0.81[EUR][1000 genomes]
rs7768577	0.81[EUR][1000 genomes]
rs9320289	0.81[EUR][1000 genomes]
rs9320292	0.81[EUR][1000 genomes]
rs9374089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374106	0.92[EUR][1000 genomes]
rs9386805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386807	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386810	0.81[EUR][1000 genomes]
rs9386817	0.81[EUR][1000 genomes]
rs9398200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398205	0.81[EUR][1000 genomes]
rs9400279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9400286	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400299	0.92[EUR][1000 genomes]
rs9480969	0.81[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109684000-109702400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:109684400-109702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:109690600-109701800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:109693400-109702600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:109694400-109701800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:109696600-109701400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:109696800-109702400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:109697800-109701200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:109697800-109702400	Weak transcription	Esophagus	oesophagus
10	chr6:109697800-109702800	Weak transcription	Spleen	Spleen
11	chr6:109698200-109701600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
12	chr6:109698400-109702400	Weak transcription	Lung	lung
13	chr6:109699200-109701200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:109699400-109701400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:109699400-109702400	Weak transcription	Gastric	stomach
16	chr6:109699400-109702600	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr6:109699600-109702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:109699600-109702400	Weak transcription	Pancreas	Pancrea
19	chr6:109699800-109702400	Transcr. at gene 5' and 3'	K562	blood
20	chr6:109700000-109701200	Enhancers	Stomach Mucosa	stomach
21	chr6:109700200-109701200	Enhancers	Fetal Lung	lung
22	chr6:109700200-109701400	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
23	chr6:109700200-109701600	Flanking Active TSS	Thymus	Thymus
24	chr6:109700200-109701600	Transcr. at gene 5' and 3'	Dnd41	blood
25	chr6:109700200-109701800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr6:109700200-109701800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr6:109700200-109702000	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr6:109700200-109702400	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr6:109700200-109705600	Active TSS	Stomach Smooth Muscle	stomach
30	chr6:109700400-109701200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:109700400-109701200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:109700400-109701200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:109700400-109701200	Enhancers	Aorta	Aorta
34	chr6:109700400-109701200	Enhancers	Fetal Brain Female	brain
35	chr6:109700400-109701200	Enhancers	Fetal Heart	heart
36	chr6:109700400-109701400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
37	chr6:109700400-109701600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr6:109700400-109701600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:109700400-109701800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr6:109700400-109702000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:109700400-109702200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr6:109700400-109702200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:109700400-109705200	Active TSS	Right Ventricle	heart
44	chr6:109700600-109701200	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr6:109700600-109701200	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr6:109700600-109701200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:109700600-109701200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr6:109700600-109701200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr6:109700600-109701200	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr6:109700600-109701600	Enhancers	Primary B cells from peripheral blood	blood

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