Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109742336..109749135-chr6:109759459..109767338,11	MCF-7	breast:
2	chr6:109742234..109744237-chr6:109774891..109776518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135587	Chromatin interaction
ENSG00000185250	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080533	0.81[EUR][1000 genomes]
rs10434873	0.81[EUR][1000 genomes]
rs11505167	0.81[EUR][1000 genomes]
rs1303981	0.81[EUR][1000 genomes]
rs17070656	0.81[EUR][1000 genomes]
rs2275651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60640103	0.81[EUR][1000 genomes]
rs6568587	0.81[EUR][1000 genomes]
rs6917713	0.81[EUR][1000 genomes]
rs6925005	0.81[EUR][1000 genomes]
rs6932271	0.81[EUR][1000 genomes]
rs7768577	0.81[EUR][1000 genomes]
rs9320289	0.81[EUR][1000 genomes]
rs9320292	0.81[EUR][1000 genomes]
rs9374089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374106	0.92[EUR][1000 genomes]
rs9386807	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386810	0.81[EUR][1000 genomes]
rs9386817	0.81[EUR][1000 genomes]
rs9398200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398205	0.81[EUR][1000 genomes]
rs9400279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9400286	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400299	0.92[EUR][1000 genomes]
rs9480969	0.81[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
4	chr6:109724400-109750400	Weak transcription	Ovary	ovary
5	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
6	chr6:109731400-109745200	Weak transcription	Pancreas	Pancrea
7	chr6:109735200-109750200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:109735600-109750000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:109736600-109760800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:109737000-109745400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:109737000-109745400	Weak transcription	Left Ventricle	heart
12	chr6:109737400-109750200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:109740400-109754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:109741800-109744800	Enhancers	Placenta	Placenta
15	chr6:109742200-109745200	Weak transcription	NHEK	skin
16	chr6:109742400-109745200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:109742400-109745200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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