Variant report

Variant	rs9400279
Chromosome Location	chr6:109683057-109683058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109675179..109679333-chr6:109679553..109683129,6	K562	blood:
2	chr6:109628997..109630625-chr6:109681004..109683799,2	K562	blood:
3	chr6:109669451..109671007-chr6:109682234..109683923,2	K562	blood:
4	chr6:109681277..109683084-chr6:109700704..109702275,2	K562	blood:
5	chr6:109682199..109685973-chr6:109687053..109690833,5	MCF-7	breast:
6	chr6:109658622..109660807-chr6:109682756..109684452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10080533	0.81[EUR][1000 genomes]
rs10434873	0.81[EUR][1000 genomes]
rs11505167	0.81[EUR][1000 genomes]
rs1303981	0.81[EUR][1000 genomes]
rs17070656	0.81[EUR][1000 genomes]
rs2275651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60640103	0.81[EUR][1000 genomes]
rs6917713	0.81[EUR][1000 genomes]
rs6932271	0.81[EUR][1000 genomes]
rs7768577	0.81[EUR][1000 genomes]
rs9320289	0.81[EUR][1000 genomes]
rs9320292	0.81[EUR][1000 genomes]
rs9374089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374106	0.92[EUR][1000 genomes]
rs9386805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386807	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9386810	0.81[EUR][1000 genomes]
rs9386817	0.81[EUR][1000 genomes]
rs9398200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398205	0.81[EUR][1000 genomes]
rs9400286	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9400299	0.92[EUR][1000 genomes]
rs9480969	0.81[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:109673600-109683200	Weak transcription	HMEC	breast
3	chr6:109673600-109683400	Weak transcription	Gastric	stomach
4	chr6:109673600-109683400	Weak transcription	HUVEC	blood vessel
5	chr6:109673600-109687000	Weak transcription	Right Ventricle	heart
6	chr6:109674000-109683200	Weak transcription	Small Intestine	intestine
7	chr6:109675000-109684600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
14	chr6:109675200-109684400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:109675200-109688800	Strong transcription	Primary T cells from cord blood	blood
16	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:109675400-109691400	Strong transcription	Osteobl	bone
18	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:109677000-109683400	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr6:109677000-109684200	Strong transcription	Brain Hippocampus Middle	brain
21	chr6:109677000-109687200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
23	chr6:109677200-109684000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:109677600-109683200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:109677800-109683800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:109678000-109684000	Strong transcription	Fetal Brain Female	brain
29	chr6:109678200-109683600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:109678200-109683800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:109678200-109687800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:109678200-109691400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
34	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:109678400-109683200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:109678400-109683200	Strong transcription	Fetal Muscle Leg	muscle
37	chr6:109678400-109683200	Weak transcription	A549	lung
38	chr6:109678400-109683200	Weak transcription	NHLF	lung
39	chr6:109678400-109683400	Strong transcription	Liver	Liver
40	chr6:109678400-109683600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:109678400-109684000	Strong transcription	Aorta	Aorta
42	chr6:109678400-109684000	Strong transcription	Fetal Lung	lung
43	chr6:109678400-109684000	Strong transcription	NHDF-Ad	bronchial
44	chr6:109678400-109684200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:109678400-109684200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:109678400-109684200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:109678400-109685400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:109678600-109683400	Strong transcription	HSMM	muscle

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