Variant report

Variant	rs4376385
Chromosome Location	chr6:110112215-110112216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10499056	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130817	0.95[ASN][1000 genomes]
rs4295520	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407743	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73525129	0.95[ASN][1000 genomes]
rs73765005	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv886533	chr6:110067773-110126393	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110013000-110114400	Weak transcription	Right Ventricle	heart
2	chr6:110036800-110115600	Weak transcription	Colonic Mucosa	Colon
3	chr6:110044200-110115400	Weak transcription	Brain Angular Gyrus	brain
4	chr6:110058800-110112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:110059200-110124000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:110081600-110115000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:110082000-110152600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:110082200-110119800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:110084200-110115400	Weak transcription	Small Intestine	intestine
10	chr6:110085600-110112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:110089600-110115600	Weak transcription	Esophagus	oesophagus
12	chr6:110089600-110115600	Weak transcription	Gastric	stomach
13	chr6:110089800-110115200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:110090000-110112400	Weak transcription	Fetal Stomach	stomach
15	chr6:110090000-110113600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:110090000-110114400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:110090000-110115400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:110090000-110115800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:110090000-110121000	Weak transcription	Ovary	ovary
20	chr6:110090200-110115600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:110090200-110115600	Weak transcription	Pancreas	Pancrea
22	chr6:110090400-110114600	Weak transcription	Thymus	Thymus
23	chr6:110090400-110115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:110090400-110149200	Weak transcription	Fetal Intestine Large	intestine
25	chr6:110093400-110115200	Weak transcription	Fetal Brain Female	brain
26	chr6:110094400-110114600	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:110094800-110117400	Weak transcription	Fetal Heart	heart
28	chr6:110095000-110115600	Weak transcription	Psoas Muscle	Psoas
29	chr6:110095000-110115600	Weak transcription	Spleen	Spleen
30	chr6:110102800-110115600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:110103200-110114400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:110104600-110116200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:110105000-110112400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:110105000-110114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:110105200-110114200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:110105600-110116200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:110105600-110127800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr6:110106000-110112600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:110106400-110114400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr6:110106600-110114400	Weak transcription	Fetal Kidney	kidney
41	chr6:110106800-110112800	Strong transcription	Primary hematopoietic stem cells	blood
42	chr6:110106800-110115800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:110106800-110127000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:110107200-110114800	Strong transcription	Primary B cells from cord blood	blood
45	chr6:110107800-110115000	Weak transcription	Fetal Lung	lung
46	chr6:110107800-110115600	Weak transcription	Lung	lung
47	chr6:110108000-110114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:110108000-110114400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:110108000-110114600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:110108000-110140200	Weak transcription	Fetal Brain Male	brain

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