Variant report

Variant	rs10499573
Chromosome Location	chr7:26260095-26260096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26256690..26258566-chr7:26258730..26260333,2	MCF-7	breast:
2	chr7:26234054..26237334-chr7:26259842..26263673,3	MCF-7	breast:
3	chr7:26241688..26243275-chr7:26259596..26261492,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10951126	0.94[EUR][1000 genomes]
rs10951127	0.88[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs11978377	0.94[EUR][1000 genomes]
rs11979154	0.94[EUR][1000 genomes]
rs12533620	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12537093	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12539124	1.00[EUR][1000 genomes]
rs1864241	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2070601	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237329	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237330	0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs2237332	0.94[EUR][1000 genomes]
rs2237333	0.94[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs2237334	0.94[EUR][1000 genomes]
rs41374744	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4273	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58438239	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58914793	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6960012	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9638832	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9639531	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26244400-26271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:26245800-26263400	Weak transcription	Fetal Brain Male	brain
3	chr7:26250200-26263400	Weak transcription	Fetal Heart	heart
4	chr7:26252800-26263800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:26253200-26263800	Weak transcription	Brain Germinal Matrix	brain
6	chr7:26253600-26263600	Weak transcription	Fetal Brain Female	brain

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