Variant report
| Variant | rs58438239 |
|---|---|
| Chromosome Location | chr7:26268255-26268256 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:26264944..26269411-chr7:26271186..26275116,6 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10499573 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10951126 | 0.81[EUR][1000 genomes] |
| rs10951127 | 0.81[EUR][1000 genomes] |
| rs11978377 | 0.81[EUR][1000 genomes] |
| rs11979154 | 0.81[EUR][1000 genomes] |
| rs12533620 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12537093 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12539124 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1864241 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2070601 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2237329 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2237330 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2237332 | 0.81[EUR][1000 genomes] |
| rs2237333 | 0.81[EUR][1000 genomes] |
| rs2237334 | 0.81[EUR][1000 genomes] |
| rs41374744 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4273 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58914793 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6960012 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9638832 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9639531 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021308 | chr7:26116605-26419720 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 166 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018971 | chr7:26161228-26380361 | Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| 3 | esv1821097 | chr7:26243108-26303403 | Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:26244400-26271400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
