Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:26272249..26274345-chr7:26278548..26281034,2	MCF-7	breast:
2	chr7:26272335..26275013-chr7:26275763..26278942,5	K562	blood:
3	chr7:26273327..26275499-chr7:26293540..26295468,2	K562	blood:
4	chr7:26264944..26269411-chr7:26271186..26275116,6	K562	blood:
5	chr7:26273432..26276921-chr7:26278671..26281844,3	K562	blood:
6	chr7:26239917..26242744-chr7:26272184..26274251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10499573	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10951126	0.81[EUR][1000 genomes]
rs10951127	0.81[EUR][1000 genomes]
rs11978377	0.81[EUR][1000 genomes]
rs11979154	0.81[EUR][1000 genomes]
rs12533620	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12537093	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539124	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1864241	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2070601	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237329	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237330	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237332	0.81[EUR][1000 genomes]
rs2237333	0.81[EUR][1000 genomes]
rs2237334	0.81[EUR][1000 genomes]
rs41374744	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4273	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58438239	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6960012	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9638832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9639531	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	esv1821097	chr7:26243108-26303403	Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26273400-26274400	Flanking Active TSS	K562	blood
2	chr7:26273600-26274200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:26273600-26274400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:26273800-26274200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:26273800-26274200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:26273800-26274200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:26273800-26274200	Enhancers	Monocytes-CD14+_RO01746	blood

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