Variant report

Variant	rs10500506
Chromosome Location	chr16:65045951-65045952
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10500507	0.81[YRI][hapmap]
rs11862311	0.81[YRI][hapmap]
rs11866929	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs16968351	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16968359	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16968386	0.90[YRI][hapmap]
rs16968437	0.90[YRI][hapmap]
rs58403970	0.95[AFR][1000 genomes]
rs6498967	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6498973	0.86[YRI][hapmap]
rs7192855	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7192859	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7198314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026211	0.87[AFR][1000 genomes]
rs74026226	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74026228	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026230	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74026233	0.88[AFR][1000 genomes]
rs8048429	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8049948	0.88[ASW][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs8050117	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs8056507	0.81[MKK][hapmap];0.86[YRI][hapmap]
rs8057316	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:65036000-65051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
5	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
6	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:65039400-65050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:65039600-65049000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr16:65040000-65049800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:65040400-65049800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:65040600-65086000	Weak transcription	HMEC	breast
14	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
16	chr16:65041600-65046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr16:65041600-65047000	Weak transcription	Fetal Stomach	stomach
18	chr16:65042000-65046200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr16:65043800-65046800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:65043800-65047200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr16:65044200-65046200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr16:65044200-65050600	Weak transcription	Fetal Muscle Leg	muscle
23	chr16:65044400-65047400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr16:65044600-65046400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr16:65044600-65049000	Weak transcription	Fetal Brain Female	brain
26	chr16:65044600-65064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:65044600-65069000	Weak transcription	Brain Germinal Matrix	brain
28	chr16:65044800-65046000	Weak transcription	Brain Angular Gyrus	brain
29	chr16:65044800-65049600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr16:65045200-65047400	Enhancers	NHDF-Ad	bronchial
31	chr16:65045400-65046600	Enhancers	Brain Hippocampus Middle	brain
32	chr16:65045400-65050600	Weak transcription	Fetal Brain Male	brain
33	chr16:65045600-65046200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr16:65045600-65047400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr16:65045800-65046000	Genic enhancers	Fetal Lung	lung
36	chr16:65045800-65046200	Strong transcription	Ovary	ovary
37	chr16:65045800-65046400	Enhancers	Brain Substantia Nigra	brain
38	chr16:65045800-65046400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr16:65045800-65046400	Genic enhancers	HSMM	muscle
40	chr16:65045800-65046600	Enhancers	Brain Anterior Caudate	brain
41	chr16:65045800-65046800	Enhancers	NH-A	brain
42	chr16:65045800-65047000	Enhancers	Osteobl	bone
43	chr16:65045800-65047200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr16:65045800-65047200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr16:65045800-65047200	Enhancers	HSMMtube	muscle
46	chr16:65045800-65047200	Enhancers	NHLF	lung

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