Variant report

Variant	rs11866929
Chromosome Location	chr16:65041054-65041055
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10500506	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10500507	0.81[YRI][hapmap]
rs11863596	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16968351	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs16968359	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16968386	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16968437	0.90[YRI][hapmap]
rs56244098	0.83[AFR][1000 genomes]
rs58403970	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61143204	0.80[AFR][1000 genomes]
rs6498967	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6498973	0.87[YRI][hapmap]
rs7192855	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7192859	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7198314	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs74026211	0.91[AFR][1000 genomes]
rs74026226	0.84[AFR][1000 genomes]
rs74026228	0.84[AFR][1000 genomes]
rs74026230	0.84[AFR][1000 genomes]
rs74026233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8048429	0.81[AFR][1000 genomes]
rs8049948	0.90[YRI][hapmap]
rs8050117	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8056507	0.86[YRI][hapmap]
rs8057316	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
3	chr16:65022000-65041200	Weak transcription	Fetal Heart	heart
4	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
5	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:65032200-65043400	Weak transcription	Fetal Brain Male	brain
7	chr16:65035200-65042000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:65036000-65051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr16:65036400-65043400	Weak transcription	Brain Substantia Nigra	brain
10	chr16:65036400-65043600	Weak transcription	Brain Hippocampus Middle	brain
11	chr16:65036600-65041400	Strong transcription	HSMM	muscle
12	chr16:65036600-65043600	Weak transcription	Brain Angular Gyrus	brain
13	chr16:65037000-65043800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr16:65037000-65044000	Strong transcription	Osteobl	bone
15	chr16:65037200-65041400	Strong transcription	NHLF	lung
16	chr16:65037200-65041600	Strong transcription	Fetal Stomach	stomach
17	chr16:65037600-65041200	Strong transcription	Fetal Kidney	kidney
18	chr16:65037600-65042000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr16:65037800-65041600	Strong transcription	NHDF-Ad	bronchial
20	chr16:65037800-65044400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:65039000-65043600	Weak transcription	Brain Anterior Caudate	brain
22	chr16:65039000-65043800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:65039000-65043800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
25	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
26	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr16:65039400-65043600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr16:65039400-65043600	Weak transcription	Fetal Brain Female	brain
29	chr16:65039400-65050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr16:65039600-65043600	Weak transcription	Brain Germinal Matrix	brain
31	chr16:65039600-65045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr16:65039600-65049000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr16:65040000-65044000	Weak transcription	Spleen	Spleen
36	chr16:65040000-65049800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr16:65040200-65041600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr16:65040200-65041600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr16:65040200-65045800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr16:65040400-65043400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr16:65040400-65049800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr16:65040600-65041800	Weak transcription	NH-A	brain
43	chr16:65040600-65043800	Weak transcription	Fetal Muscle Leg	muscle
44	chr16:65040600-65045800	Weak transcription	HSMMtube	muscle
45	chr16:65040600-65086000	Weak transcription	HMEC	breast
46	chr16:65040800-65043800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr16:65041000-65041400	Weak transcription	Placenta	Placenta
48	chr16:65041000-65045600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr16:65041000-65045800	Weak transcription	Ovary	ovary
50	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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