Variant report

Variant	rs7192859
Chromosome Location	chr16:65019049-65019050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10500506	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10500507	0.81[YRI][hapmap]
rs11863596	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11866929	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16968351	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16968359	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16968386	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16968437	0.90[YRI][hapmap]
rs56244098	0.85[AFR][1000 genomes]
rs56252319	0.81[AFR][1000 genomes]
rs58403970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61143204	0.83[AFR][1000 genomes]
rs6498965	0.81[AFR][1000 genomes]
rs6498967	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6498973	0.87[YRI][hapmap]
rs7192855	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7198314	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs74026211	0.98[AFR][1000 genomes]
rs74026226	0.89[AFR][1000 genomes]
rs74026228	0.89[AFR][1000 genomes]
rs74026230	0.89[AFR][1000 genomes]
rs74026233	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8048429	0.87[AFR][1000 genomes]
rs8049948	0.90[YRI][hapmap]
rs8050117	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8056507	0.86[YRI][hapmap]
rs8057316	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:64998000-65024800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:65003400-65034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr16:65004800-65027600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:65006600-65020600	Weak transcription	Brain Germinal Matrix	brain
7	chr16:65006600-65021000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:65006600-65024800	Weak transcription	Spleen	Spleen
9	chr16:65007000-65020200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr16:65007000-65020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr16:65008600-65024000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
13	chr16:65014400-65020200	Weak transcription	NHLF	lung
14	chr16:65015000-65020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr16:65016000-65020400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:65016000-65020800	Weak transcription	Fetal Intestine Large	intestine
18	chr16:65016200-65019400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr16:65016200-65019400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr16:65016200-65020200	Weak transcription	Aorta	Aorta
21	chr16:65016200-65021600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:65016200-65025000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:65016200-65032400	Weak transcription	Lung	lung
24	chr16:65016200-65040200	Weak transcription	Left Ventricle	heart
25	chr16:65016600-65020400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr16:65016800-65020400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr16:65016800-65021400	Weak transcription	HMEC	breast
28	chr16:65017000-65021800	Weak transcription	Fetal Kidney	kidney
29	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
30	chr16:65017400-65020400	Weak transcription	Fetal Brain Female	brain
31	chr16:65018000-65019400	Weak transcription	Fetal Muscle Leg	muscle
32	chr16:65018000-65020200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr16:65018000-65020800	Weak transcription	Brain Angular Gyrus	brain
34	chr16:65018000-65021000	Weak transcription	Fetal Heart	heart
35	chr16:65018000-65024000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:65018000-65025400	Weak transcription	Small Intestine	intestine
37	chr16:65018000-65035600	Strong transcription	HSMM	muscle
38	chr16:65018200-65019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr16:65018200-65019600	Weak transcription	HSMMtube	muscle
40	chr16:65018200-65019800	Weak transcription	Fetal Brain Male	brain
41	chr16:65018200-65020200	Weak transcription	Brain Hippocampus Middle	brain
42	chr16:65018200-65020800	Weak transcription	Brain Substantia Nigra	brain
43	chr16:65018200-65020800	Weak transcription	Placenta	Placenta
44	chr16:65018200-65021000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr16:65018200-65025000	Strong transcription	Ovary	ovary
46	chr16:65018400-65019600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:65018400-65020400	Weak transcription	Fetal Stomach	stomach
48	chr16:65018400-65020800	Weak transcription	Brain Anterior Caudate	brain
49	chr16:65018400-65021800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr16:65018400-65023000	Strong transcription	Fetal Lung	lung

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