Variant report

Variant	rs10501156
Chromosome Location	chr11:36470815-36470816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:36469984-36470904	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:36469566..36471413-chr11:36472825..36475082,2	MCF-7	breast:
2	chr11:36469765..36471660-chr11:36474085..36476889,2	K562	blood:
3	chr11:36469765..36471992-chr11:36474085..36476889,3	K562	blood:

Variant related genes	Relation type
PRR5L	TF binding region
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs331478	0.81[CEU][hapmap]
rs331479	0.81[CEU][hapmap]
rs510428	0.86[CEU][hapmap]
rs61877401	0.83[AMR][1000 genomes]
rs61877408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7483893	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv518499	chr11:36466814-36479789	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
3	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:36444000-36471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:36444200-36471400	Weak transcription	Small Intestine	intestine
7	chr11:36447600-36471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:36448600-36471000	Weak transcription	Fetal Thymus	thymus
9	chr11:36448600-36471000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr11:36448800-36471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:36449200-36471400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:36449400-36471200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:36449400-36471200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:36449600-36474000	Weak transcription	Right Ventricle	heart
15	chr11:36452800-36473800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:36453400-36471200	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:36453600-36471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:36454800-36473600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:36455800-36473800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:36457400-36471400	Weak transcription	Stomach Mucosa	stomach
21	chr11:36461600-36472600	Weak transcription	NH-A	brain
22	chr11:36462000-36471400	Weak transcription	Liver	Liver
23	chr11:36463000-36474000	Weak transcription	Fetal Kidney	kidney
24	chr11:36463600-36471400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:36463600-36471600	Weak transcription	Left Ventricle	heart
26	chr11:36464400-36478800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:36464600-36471600	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr11:36465400-36471400	Weak transcription	Brain Angular Gyrus	brain
29	chr11:36465800-36471600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:36467400-36471400	Strong transcription	Colonic Mucosa	Colon
31	chr11:36467600-36471200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:36467600-36471400	Genic enhancers	Spleen	Spleen
33	chr11:36467800-36471800	Enhancers	Pancreas	Pancrea
34	chr11:36467800-36478800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:36468000-36471600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:36468200-36471600	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr11:36468200-36473800	Weak transcription	Esophagus	oesophagus
38	chr11:36468400-36471000	Weak transcription	Ovary	ovary
39	chr11:36468400-36471400	Enhancers	Fetal Lung	lung
40	chr11:36468400-36471400	Weak transcription	Right Atrium	heart
41	chr11:36469000-36471200	Weak transcription	Thymus	Thymus
42	chr11:36469000-36471600	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr11:36469000-36472400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:36469200-36471000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:36469200-36471200	Weak transcription	NHLF	lung
46	chr11:36469200-36471600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:36469200-36474000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:36469200-36475600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:36469200-36475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:36469200-36480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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