Variant report

Variant	rs61877401
Chromosome Location	chr11:36465141-36465142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36457236..36460043-chr11:36463746..36466042,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRAF6-3	chr11:36461899-36465571	ucscGeneNc_uc001mwq_1

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10501156	0.83[AMR][1000 genomes]
rs331478	0.95[EUR][1000 genomes]
rs331479	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510428	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877408	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046452	chr11:36460958-36503079	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
3	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:36432000-36467800	Weak transcription	Esophagus	oesophagus
5	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:36444000-36471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:36444200-36471400	Weak transcription	Small Intestine	intestine
8	chr11:36447600-36471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:36448400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:36448600-36470600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:36448600-36471000	Weak transcription	Fetal Thymus	thymus
12	chr11:36448600-36471000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:36448800-36471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:36449200-36467800	Weak transcription	Ovary	ovary
15	chr11:36449200-36469200	Weak transcription	Placenta	Placenta
16	chr11:36449200-36471400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:36449400-36471200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr11:36449400-36471200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:36449600-36467600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:36449600-36469000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:36449600-36474000	Weak transcription	Right Ventricle	heart
22	chr11:36450000-36468400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:36452400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:36452800-36473800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:36453400-36471200	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:36453600-36471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:36454200-36467400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:36454200-36468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:36454200-36468400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:36454200-36468600	Weak transcription	HMEC	breast
31	chr11:36454200-36468800	Weak transcription	Osteobl	bone
32	chr11:36454800-36473600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:36455800-36473800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:36456600-36470800	Strong transcription	Fetal Intestine Large	intestine
35	chr11:36457400-36471400	Weak transcription	Stomach Mucosa	stomach
36	chr11:36459200-36465400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:36459600-36468400	Weak transcription	Fetal Lung	lung
38	chr11:36460200-36467800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:36461000-36467800	Weak transcription	Pancreas	Pancrea
40	chr11:36461200-36467800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:36461600-36466400	Weak transcription	Colonic Mucosa	Colon
42	chr11:36461600-36472600	Weak transcription	NH-A	brain
43	chr11:36462000-36471400	Weak transcription	Liver	Liver
44	chr11:36462400-36466400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:36462400-36467800	Weak transcription	Adipose Nuclei	Adipose
46	chr11:36462600-36468000	Weak transcription	NHEK	skin
47	chr11:36462800-36467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:36463000-36467600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:36463000-36474000	Weak transcription	Fetal Kidney	kidney
50	chr11:36463200-36468600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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