Variant report

Variant	rs331479
Chromosome Location	chr11:36460615-36460616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10501156	0.81[CEU][hapmap]
rs12275362	1.00[CHB][hapmap]
rs12418202	0.83[CEU][hapmap]
rs2292648	0.83[CEU][hapmap]
rs331478	1.00[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs5030461	1.00[CHB][hapmap]
rs5030480	1.00[CHB][hapmap]
rs510428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877401	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718011	1.00[CHB][hapmap]
rs890262	0.83[CEU][hapmap]
rs9630172	1.00[CHB][hapmap]
rs9630174	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
3	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:36432000-36467800	Weak transcription	Esophagus	oesophagus
5	chr11:36433800-36471400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:36435200-36463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:36442600-36462200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:36444000-36471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:36444200-36471400	Weak transcription	Small Intestine	intestine
10	chr11:36447600-36471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:36448400-36463800	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr11:36448400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:36448600-36470600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:36448600-36471000	Weak transcription	Fetal Thymus	thymus
15	chr11:36448600-36471000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr11:36448800-36463000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:36448800-36471400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:36449200-36467800	Weak transcription	Ovary	ovary
19	chr11:36449200-36469200	Weak transcription	Placenta	Placenta
20	chr11:36449200-36471400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:36449400-36471200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:36449400-36471200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:36449600-36463000	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:36449600-36467600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:36449600-36469000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:36449600-36474000	Weak transcription	Right Ventricle	heart
27	chr11:36449800-36463000	Weak transcription	Fetal Stomach	stomach
28	chr11:36449800-36463000	Weak transcription	Lung	lung
29	chr11:36450000-36468400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:36450200-36463400	Weak transcription	Brain Anterior Caudate	brain
31	chr11:36452400-36470600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:36452800-36473800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:36453200-36462600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:36453400-36464400	Weak transcription	Brain Angular Gyrus	brain
35	chr11:36453400-36471200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:36453600-36461200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:36453600-36463000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:36453600-36471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:36454000-36462000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:36454000-36464800	Weak transcription	Brain Substantia Nigra	brain
41	chr11:36454200-36463000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:36454200-36467400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:36454200-36468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:36454200-36468400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:36454200-36468600	Weak transcription	HMEC	breast
46	chr11:36454200-36468800	Weak transcription	Osteobl	bone
47	chr11:36454400-36461200	Weak transcription	NH-A	brain
48	chr11:36454400-36462400	Weak transcription	Fetal Kidney	kidney
49	chr11:36454800-36461600	Strong transcription	Colonic Mucosa	Colon
50	chr11:36454800-36473600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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