Variant report

Variant	rs10501623
Chromosome Location	chr11:86291625-86291626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86290858..86293658-chr11:86295184..86297088,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10898502	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11234697	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs11234698	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11821546	1.00[CEU][hapmap]
rs17211409	1.00[CEU][hapmap]
rs7116278	1.00[CEU][hapmap]
rs7116895	1.00[CEU][hapmap]
rs7117234	1.00[CEU][hapmap]
rs7119775	1.00[CEU][hapmap]
rs7126717	1.00[CEU][hapmap]
rs7935611	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[ASN][1000 genomes]
rs7950878	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1808984	chr11:86282680-86301717	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555677	chr11:86285994-86291818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv555678	chr11:86285994-86305977	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv555684	chr11:86286341-86291818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
3	chr11:86286000-86299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:86286400-86298200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:86287200-86292000	Enhancers	Right Ventricle	heart
6	chr11:86287400-86292000	Enhancers	Ovary	ovary
7	chr11:86287600-86291800	Enhancers	Colon Smooth Muscle	Colon
8	chr11:86287600-86293400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:86288600-86293400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:86288600-86293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:86289200-86292000	Enhancers	Pancreas	Pancrea
12	chr11:86289200-86292000	Enhancers	Right Atrium	heart
13	chr11:86289200-86292200	Enhancers	Fetal Intestine Large	intestine
14	chr11:86289800-86292000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:86289800-86292000	Enhancers	Stomach Smooth Muscle	stomach
16	chr11:86289800-86293000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:86289800-86293800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:86289800-86303200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:86289800-86303400	Weak transcription	Stomach Mucosa	stomach
20	chr11:86290000-86291800	Weak transcription	Adipose Nuclei	Adipose
21	chr11:86290000-86291800	Weak transcription	HepG2	liver
22	chr11:86290000-86293600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:86290000-86293800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:86290400-86292600	Weak transcription	Aorta	Aorta
25	chr11:86290600-86291800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:86290600-86298200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:86290600-86299400	Weak transcription	Psoas Muscle	Psoas
28	chr11:86290800-86291800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:86290800-86291800	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:86290800-86293800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:86290800-86298200	Weak transcription	HMEC	breast
32	chr11:86290800-86299200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:86291000-86292200	Enhancers	Fetal Intestine Small	intestine
34	chr11:86291000-86292200	Enhancers	Fetal Kidney	kidney
35	chr11:86291200-86291800	Enhancers	Fetal Lung	lung
36	chr11:86291200-86291800	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr11:86291200-86292000	Enhancers	Gastric	stomach
38	chr11:86291200-86292200	Flanking Active TSS	A549	lung
39	chr11:86291400-86292200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:86291400-86293800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:86291400-86298200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:86291600-86291800	Enhancers	Fetal Muscle Trunk	muscle
43	chr11:86291600-86291800	Enhancers	Rectal Smooth Muscle	rectum
44	chr11:86291600-86291800	Enhancers	NHLF	lung
45	chr11:86291600-86292000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:86291600-86292000	Enhancers	Fetal Stomach	stomach
47	chr11:86291600-86292400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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