Variant report

Variant	rs7950878
Chromosome Location	chr11:86288287-86288288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86287937..86289819-chr11:86294344..86297343,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10501623	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs10898502	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs11234697	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234698	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821546	0.82[CEU][hapmap]
rs17211409	0.82[CEU][hapmap]
rs7116278	0.82[CEU][hapmap]
rs7116895	0.82[CEU][hapmap]
rs7117234	0.82[CEU][hapmap]
rs7119775	0.82[CEU][hapmap]
rs7126717	0.82[CEU][hapmap]
rs7935611	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1808984	chr11:86282680-86301717	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3463631	chr11:86284104-86288702	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv555675	chr11:86285994-86288287	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv555676	chr11:86285994-86288584	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv555677	chr11:86285994-86291818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv555678	chr11:86285994-86305977	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv555681	chr11:86286096-86288584	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv555682	chr11:86286147-86288287	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv555683	chr11:86286147-86288584	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv555684	chr11:86286341-86291818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86271000-86291200	Weak transcription	Gastric	stomach
2	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
4	chr11:86277400-86289400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:86279000-86289000	Weak transcription	NHEK	skin
6	chr11:86281400-86289200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:86282000-86288400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:86283400-86289400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:86283400-86289400	Weak transcription	Stomach Mucosa	stomach
10	chr11:86285000-86288800	Enhancers	HUVEC	blood vessel
11	chr11:86285400-86288400	Enhancers	A549	lung
12	chr11:86285400-86288800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:86285400-86288800	Enhancers	Right Atrium	heart
14	chr11:86285600-86288600	Enhancers	Spleen	Spleen
15	chr11:86285600-86288800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:86285600-86289400	Enhancers	NH-A	brain
17	chr11:86285600-86290600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:86286000-86288400	Enhancers	Stomach Smooth Muscle	stomach
19	chr11:86286000-86289000	Weak transcription	HSMMtube	muscle
20	chr11:86286000-86299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:86286200-86288800	Weak transcription	NHLF	lung
22	chr11:86286400-86288800	Weak transcription	Fetal Kidney	kidney
23	chr11:86286400-86289000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:86286400-86289000	Weak transcription	Fetal Heart	heart
25	chr11:86286400-86290200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:86286400-86298200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:86286600-86288400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:86286600-86288600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:86286600-86289000	Weak transcription	HMEC	breast
30	chr11:86286800-86289800	Enhancers	Fetal Stomach	stomach
31	chr11:86287200-86288600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:86287200-86289400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:86287200-86292000	Enhancers	Right Ventricle	heart
34	chr11:86287400-86288400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:86287400-86288800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:86287400-86288800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:86287400-86288800	Enhancers	Lung	lung
38	chr11:86287400-86291400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:86287400-86291400	Enhancers	Left Ventricle	heart
40	chr11:86287400-86292000	Enhancers	Ovary	ovary
41	chr11:86287600-86288800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:86287600-86289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:86287600-86289400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:86287600-86290000	Enhancers	Adipose Nuclei	Adipose
45	chr11:86287600-86291200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:86287600-86291800	Enhancers	Colon Smooth Muscle	Colon
47	chr11:86287600-86293400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:86287800-86288800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:86287800-86289400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr11:86288000-86289200	Enhancers	NHDF-Ad	bronchial

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