Variant report

Variant	rs7116895
Chromosome Location	chr11:86322025-86322026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10501623	1.00[CEU][hapmap]
rs11821546	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17211409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56672587	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60024218	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60777296	1.00[ASN][1000 genomes]
rs7103017	0.88[ASW][hapmap]
rs7115713	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116278	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs7117234	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs7119775	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7126717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7950878	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86319600-86328200	Weak transcription	Ovary	ovary
2	chr11:86320000-86322200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:86320000-86325000	Weak transcription	Adipose Nuclei	Adipose
4	chr11:86320000-86330400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:86321000-86322200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:86321200-86322200	Enhancers	Fetal Heart	heart
7	chr11:86321200-86322400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:86321400-86322200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:86321400-86322200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:86321400-86322200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:86321400-86322400	Enhancers	Rectal Smooth Muscle	rectum
12	chr11:86321400-86322600	Enhancers	Colon Smooth Muscle	Colon
13	chr11:86321600-86322200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:86321600-86322200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:86321800-86322200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:86321800-86322200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr11:86321800-86322200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:86321800-86322200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr11:86321800-86322400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:86321800-86343200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:86322000-86322200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:86322000-86325200	Weak transcription	A549	lung
23	chr11:86322000-86334200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:86322000-86334200	Weak transcription	Left Ventricle	heart

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