Variant report

Variant	rs56672587
Chromosome Location	chr11:86308076-86308077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11821546	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17211409	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60024218	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60777296	1.00[ASN][1000 genomes]
rs7115713	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116278	0.93[EUR][1000 genomes]
rs7116895	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117234	0.91[ASN][1000 genomes]
rs7119775	0.93[EUR][1000 genomes]
rs7126717	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3463753	chr11:86302304-86308102	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86308200	Weak transcription	Fetal Brain Male	brain
2	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
3	chr11:86300800-86308800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:86302200-86309000	Enhancers	HUVEC	blood vessel
5	chr11:86304200-86308200	Weak transcription	Fetal Stomach	stomach
6	chr11:86304400-86308200	Weak transcription	Fetal Lung	lung
7	chr11:86304400-86308400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:86304400-86309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:86304600-86308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:86304600-86308200	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:86304600-86308200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:86306600-86308200	Enhancers	Fetal Intestine Large	intestine
13	chr11:86306600-86308200	Weak transcription	NHLF	lung
14	chr11:86306600-86308600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr11:86306800-86308200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:86306800-86308200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:86306800-86308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:86306800-86308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:86306800-86309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:86307000-86308200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:86307000-86308200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:86307400-86308200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:86307400-86308200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:86307600-86308200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:86307600-86308600	Enhancers	Brain Substantia Nigra	brain
27	chr11:86307600-86308600	Enhancers	Right Atrium	heart
28	chr11:86307600-86309000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr11:86307600-86309000	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:86307800-86308400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr11:86307800-86308400	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:86307800-86308800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:86307800-86308800	Enhancers	Ovary	ovary
34	chr11:86308000-86308200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr11:86308000-86308200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr11:86308000-86308200	Weak transcription	Fetal Intestine Small	intestine
37	chr11:86308000-86308400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:86308000-86308400	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:86308000-86308400	Enhancers	Lung	lung
40	chr11:86308000-86308400	Enhancers	Rectal Smooth Muscle	rectum
41	chr11:86308000-86308400	Enhancers	Spleen	Spleen
42	chr11:86308000-86308600	Enhancers	Brain Cingulate Gyrus	brain
43	chr11:86308000-86308600	Enhancers	Fetal Heart	heart
44	chr11:86308000-86308600	Enhancers	Pancreas	Pancrea
45	chr11:86308000-86308600	Enhancers	Placenta Amnion	Placenta Amnion
46	chr11:86308000-86308600	Enhancers	Psoas Muscle	Psoas
47	chr11:86308000-86308600	Enhancers	NH-A	brain
48	chr11:86308000-86308800	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr11:86308000-86308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:86308000-86308800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links