Variant report

Variant	rs7115713
Chromosome Location	chr11:86334316-86334317
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86333716..86335655-chr11:86521325..86523278,2	MCF-7	breast:
2	chr11:86332972..86336293-chr11:86338009..86340844,3	MCF-7	breast:
3	chr11:86332528..86334846-chr11:86511454..86513733,3	MCF-7	breast:
4	chr11:86332654..86334569-chr11:86510961..86513422,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11821546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17211409	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672587	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60024218	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60777296	0.99[ASN][1000 genomes]
rs7116278	0.87[EUR][1000 genomes]
rs7116895	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7117234	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7119775	0.87[EUR][1000 genomes]
rs7126717	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86321800-86343200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:86330800-86341600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:86331000-86343600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:86331000-86346200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86332000-86335600	Enhancers	Fetal Heart	heart
6	chr11:86332200-86338800	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:86332400-86335000	Weak transcription	NHLF	lung
8	chr11:86332400-86337000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:86332800-86336000	Enhancers	Right Atrium	heart
10	chr11:86332800-86343200	Weak transcription	A549	lung
11	chr11:86333000-86335000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:86333000-86342400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:86333200-86334600	Enhancers	HMEC	breast
14	chr11:86333200-86335800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:86333200-86335800	Weak transcription	Adipose Nuclei	Adipose
16	chr11:86333200-86336200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86333200-86336400	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:86333200-86338000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:86333200-86338600	Weak transcription	Fetal Lung	lung
20	chr11:86333200-86338800	Weak transcription	HSMMtube	muscle
21	chr11:86333200-86339000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:86333200-86349800	Weak transcription	Esophagus	oesophagus
23	chr11:86333400-86335000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:86333400-86336600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:86333600-86334400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:86333600-86335200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:86333800-86334800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:86333800-86334800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:86334000-86334400	Flanking Active TSS	NHEK	skin
30	chr11:86334000-86334800	Enhancers	Rectal Smooth Muscle	rectum
31	chr11:86334000-86335000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:86334000-86335000	Enhancers	NH-A	brain
33	chr11:86334000-86335200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:86334000-86338800	Weak transcription	Right Ventricle	heart
35	chr11:86334000-86342200	Enhancers	Ovary	ovary
36	chr11:86334200-86334400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:86334200-86334400	Enhancers	NHDF-Ad	bronchial
38	chr11:86334200-86335000	Enhancers	Brain Anterior Caudate	brain
39	chr11:86334200-86335000	Enhancers	Lung	lung
40	chr11:86334200-86335200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:86334200-86335400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:86334200-86335400	Enhancers	Placenta	Placenta
43	chr11:86334200-86335400	Enhancers	Left Ventricle	heart
44	chr11:86334200-86335400	Enhancers	Stomach Smooth Muscle	stomach
45	chr11:86334200-86336000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr11:86334200-86336000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:86334200-86336200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr11:86334200-86336600	Enhancers	Pancreas	Pancrea
49	chr11:86334200-86336600	Enhancers	Psoas Muscle	Psoas
50	chr11:86334200-86337400	Enhancers	Osteobl	bone

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