Variant report

Variant	rs10502040
Chromosome Location	chr11:104557756-104557757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:104557700-104557888	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000270449	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1147029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093740	1.00[AMR][1000 genomes]
rs17102813	1.00[AMR][1000 genomes]
rs17102874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102941	1.00[AMR][1000 genomes]
rs17145140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1942505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1942506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3858423	1.00[AMR][1000 genomes]
rs3858424	1.00[AMR][1000 genomes]
rs3906475	1.00[AMR][1000 genomes]
rs57314087	1.00[AMR][1000 genomes]
rs57787900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58547868	1.00[AMR][1000 genomes]
rs59578968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60337868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61109180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106129	1.00[AMR][1000 genomes]
rs73620830	1.00[AMR][1000 genomes]
rs73620833	1.00[AMR][1000 genomes]
rs73620838	1.00[AMR][1000 genomes]
rs73620874	1.00[AMR][1000 genomes]
rs73622713	1.00[AMR][1000 genomes]
rs73622756	1.00[AMR][1000 genomes]
rs73622764	1.00[AMR][1000 genomes]
rs73622781	1.00[AMR][1000 genomes]
rs73622782	1.00[AMR][1000 genomes]
rs73627724	1.00[AMR][1000 genomes]
rs7924860	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054278	chr11:104317164-104562129	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1053886	chr11:104328822-104562129	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1037091	chr11:104330237-104559477	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556216	chr11:104333651-104560789	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104550600-104557800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:104556200-104557800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:104556400-104557800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:104557200-104559600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:104557200-104560000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:104557400-104558400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:104557600-104559600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:104557600-104559600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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