Variant report

Variant	rs7106129
Chromosome Location	chr11:104628734-104628735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10502039	1.00[AMR][1000 genomes]
rs10502040	1.00[AMR][1000 genomes]
rs1147029	1.00[AMR][1000 genomes]
rs17093740	1.00[AMR][1000 genomes]
rs17102813	1.00[AMR][1000 genomes]
rs17102874	1.00[AMR][1000 genomes]
rs17102877	1.00[AMR][1000 genomes]
rs17102941	1.00[AMR][1000 genomes]
rs17145140	1.00[AMR][1000 genomes]
rs1942505	1.00[AMR][1000 genomes]
rs1942506	1.00[AMR][1000 genomes]
rs3858423	1.00[AMR][1000 genomes]
rs3858424	1.00[AMR][1000 genomes]
rs3906475	1.00[AMR][1000 genomes]
rs56280928	1.00[AMR][1000 genomes]
rs57314087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57787900	1.00[AMR][1000 genomes]
rs58547868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59578968	1.00[AMR][1000 genomes]
rs60337868	1.00[AMR][1000 genomes]
rs61109180	1.00[AMR][1000 genomes]
rs73620830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620833	1.00[AMR][1000 genomes]
rs73620838	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622756	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622764	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622781	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622782	1.00[AMR][1000 genomes]
rs73627724	1.00[AMR][1000 genomes]
rs7924860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104628000-104629000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:104628400-104629000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:104628400-104629200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:104628400-104629400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:104628400-104629800	Enhancers	Placenta	Placenta
6	chr11:104628600-104629200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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