Variant report

Variant	rs3858423
Chromosome Location	chr11:104604223-104604224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10502039	1.00[AMR][1000 genomes]
rs10502040	1.00[AMR][1000 genomes]
rs1147029	1.00[AMR][1000 genomes]
rs17093740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102813	1.00[AMR][1000 genomes]
rs17102874	1.00[AMR][1000 genomes]
rs17102877	1.00[AMR][1000 genomes]
rs17102941	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17145140	1.00[AMR][1000 genomes]
rs1942505	1.00[AMR][1000 genomes]
rs1942506	1.00[AMR][1000 genomes]
rs3858424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3906475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57314087	1.00[AMR][1000 genomes]
rs57787900	1.00[AMR][1000 genomes]
rs58547868	1.00[AMR][1000 genomes]
rs59578968	1.00[AMR][1000 genomes]
rs60337868	1.00[AMR][1000 genomes]
rs61109180	1.00[AMR][1000 genomes]
rs7106129	1.00[AMR][1000 genomes]
rs73620830	1.00[AMR][1000 genomes]
rs73620833	1.00[AMR][1000 genomes]
rs73620838	1.00[AMR][1000 genomes]
rs73620874	1.00[AMR][1000 genomes]
rs73622713	1.00[AMR][1000 genomes]
rs73622756	1.00[AMR][1000 genomes]
rs73622764	1.00[AMR][1000 genomes]
rs73622781	1.00[AMR][1000 genomes]
rs73622782	1.00[AMR][1000 genomes]
rs73627724	1.00[AMR][1000 genomes]
rs7924860	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104603200-104607200	Weak transcription	Dnd41	blood
2	chr11:104603600-104607400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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