Variant report

Variant	rs10502102
Chromosome Location	chr11:108430674-108430675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10890850	1.00[JPT][hapmap]
rs11821101	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17108175	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17618877	1.00[JPT][hapmap]
rs17620252	1.00[JPT][hapmap]
rs17620352	1.00[JPT][hapmap]
rs1940213	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2004820	1.00[ASN][1000 genomes]
rs2624140	1.00[JPT][hapmap]
rs2852190	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2852191	1.00[ASN][1000 genomes]
rs4568972	1.00[ASN][1000 genomes]
rs7119814	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108417200-108441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108422400-108441600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:108423000-108436000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:108423400-108432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:108423400-108432400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:108423400-108436000	Weak transcription	Liver	Liver
7	chr11:108423600-108441400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:108423800-108432200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:108424200-108439400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:108426400-108432600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:108427800-108430800	Enhancers	GM12878-XiMat	blood
12	chr11:108427800-108432200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:108428600-108442000	Weak transcription	K562	blood
14	chr11:108429000-108431000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr11:108429000-108432400	Enhancers	HSMMtube	muscle
16	chr11:108429200-108430800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr11:108429200-108430800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr11:108429200-108434600	Enhancers	HSMM	muscle
19	chr11:108429400-108431000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:108429400-108431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr11:108429600-108431000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:108429600-108431000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr11:108429600-108431200	Enhancers	HMEC	breast
24	chr11:108429600-108432200	Weak transcription	Aorta	Aorta
25	chr11:108429800-108430800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:108429800-108431200	Enhancers	Adipose Nuclei	Adipose
27	chr11:108430000-108430800	Flanking Active TSS	NHDF-Ad	bronchial
28	chr11:108430000-108431000	Enhancers	Primary T cells from cord blood	blood
29	chr11:108430000-108431000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:108430000-108431200	Enhancers	Fetal Lung	lung
31	chr11:108430000-108432400	Enhancers	NH-A	brain
32	chr11:108430200-108430800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:108430200-108430800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:108430200-108431000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:108430200-108431000	Flanking Active TSS	Osteobl	bone
36	chr11:108430200-108431200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr11:108430200-108431400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:108430400-108430800	Genic enhancers	NHEK	skin
39	chr11:108430400-108430800	Active TSS	NHLF	lung
40	chr11:108430400-108431200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:108430400-108431600	Enhancers	Fetal Kidney	kidney
42	chr11:108430400-108432200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:108430400-108432600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:108430400-108436600	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:108430600-108430800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:108430600-108430800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:108430600-108431000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:108430600-108431000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:108430600-108431000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:108430600-108431000	Genic enhancers	Placenta	Placenta

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