Variant report

Variant	rs17620352
Chromosome Location	chr11:108426047-108426048
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108418879..108421922-chr11:108422966..108427217,5	K562	blood:
2	chr11:108425445..108426959-chr11:108428665..108430478,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10502102	1.00[JPT][hapmap]
rs10890850	1.00[JPT][hapmap]
rs17618877	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17620252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624140	1.00[JPT][hapmap]
rs2852190	1.00[JPT][hapmap]
rs57007024	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs59309427	0.89[ASN][1000 genomes]
rs7119814	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108417200-108441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108420800-108427600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:108422400-108441600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:108423000-108436000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:108423200-108427600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:108423200-108429600	Weak transcription	NHLF	lung
7	chr11:108423400-108427000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:108423400-108429000	Weak transcription	HSMMtube	muscle
9	chr11:108423400-108429000	Weak transcription	NHEK	skin
10	chr11:108423400-108430000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:108423400-108432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:108423400-108432400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:108423400-108436000	Weak transcription	Liver	Liver
14	chr11:108423600-108426800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:108423600-108427400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:108423600-108427600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:108423600-108429200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:108423600-108441400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:108423800-108432200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:108424200-108439400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:108424600-108426200	Weak transcription	K562	blood
22	chr11:108425200-108430600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:108425800-108426400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:108426000-108427600	Weak transcription	Placenta	Placenta

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