Variant report

Variant	rs10890850
Chromosome Location	chr11:108383560-108383561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108368444..108370288-chr11:108381123..108383752,3	K562	blood:
2	chr11:108366425..108370806-chr11:108379844..108383752,5	K562	blood:
3	chr11:108377166..108379267-chr11:108381672..108383561,2	K562	blood:

Variant related genes	Relation type
ENSG00000178202	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10502102	1.00[JPT][hapmap]
rs11212688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821101	1.00[JPT][hapmap]
rs12269879	1.00[EUR][1000 genomes]
rs12271580	1.00[EUR][1000 genomes]
rs12271879	1.00[EUR][1000 genomes]
rs12274421	1.00[EUR][1000 genomes]
rs12278754	1.00[EUR][1000 genomes]
rs12286855	1.00[EUR][1000 genomes]
rs12290857	1.00[EUR][1000 genomes]
rs17108175	1.00[JPT][hapmap]
rs17618877	1.00[JPT][hapmap]
rs17620252	1.00[JPT][hapmap]
rs17620352	1.00[JPT][hapmap]
rs1940209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1940213	1.00[JPT][hapmap]
rs2852190	1.00[JPT][hapmap]
rs4384355	1.00[EUR][1000 genomes]
rs4437999	1.00[EUR][1000 genomes]
rs4988094	1.00[EUR][1000 genomes]
rs7119814	1.00[JPT][hapmap]
rs73547096	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108369600-108384000	Weak transcription	Fetal Kidney	kidney
2	chr11:108370400-108408800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:108371800-108406400	Weak transcription	Gastric	stomach
4	chr11:108372000-108401200	Weak transcription	Esophagus	oesophagus
5	chr11:108377600-108384400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:108379800-108389200	Strong transcription	Placenta	Placenta
7	chr11:108380000-108384200	Genic enhancers	NHEK	skin
8	chr11:108380200-108384800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:108380400-108384400	Weak transcription	Stomach Mucosa	stomach
10	chr11:108380800-108384000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:108380800-108384000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:108380800-108384000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:108381000-108385600	Strong transcription	Liver	Liver
14	chr11:108381000-108408800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:108381600-108383800	Enhancers	HMEC	breast
16	chr11:108381600-108385400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:108381800-108383600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:108381800-108384200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:108382000-108384000	Weak transcription	GM12878-XiMat	blood
20	chr11:108382000-108384200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:108382000-108384200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:108382000-108384400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:108382000-108384400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:108382000-108396000	Weak transcription	Pancreas	Pancrea
25	chr11:108382200-108383600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:108382200-108384000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:108382200-108384400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:108382200-108385000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:108382200-108385600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:108382200-108385600	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr11:108382400-108383600	Weak transcription	HSMMtube	muscle
32	chr11:108382600-108385600	Strong transcription	K562	blood
33	chr11:108382800-108383600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr11:108382800-108383800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:108382800-108384000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:108383000-108384200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:108383000-108384800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:108383000-108385400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:108383000-108385600	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:108383000-108398400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:108383200-108384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:108383400-108384400	Weak transcription	HSMM	muscle
43	chr11:108383400-108385400	Strong transcription	Lung	lung
44	chr11:108383400-108385600	Strong transcription	Aorta	Aorta
45	chr11:108383400-108386600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:108383400-108387000	Weak transcription	Left Ventricle	heart

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