Variant report

Variant	rs11212688
Chromosome Location	chr11:108390454-108390455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108367494..108369928-chr11:108388212..108391402,3	MCF-7	breast:
2	chr11:108357774..108359460-chr11:108388909..108390796,2	K562	blood:
3	chr11:108367272..108370031-chr11:108388462..108390662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178202	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10890850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269879	1.00[EUR][1000 genomes]
rs12271580	1.00[EUR][1000 genomes]
rs12271879	1.00[EUR][1000 genomes]
rs12274421	1.00[EUR][1000 genomes]
rs12278754	1.00[EUR][1000 genomes]
rs12286855	1.00[EUR][1000 genomes]
rs12290857	1.00[EUR][1000 genomes]
rs1940209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4384355	1.00[EUR][1000 genomes]
rs4437999	1.00[EUR][1000 genomes]
rs4988094	1.00[EUR][1000 genomes]
rs73547096	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108370400-108408800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:108371800-108406400	Weak transcription	Gastric	stomach
3	chr11:108372000-108401200	Weak transcription	Esophagus	oesophagus
4	chr11:108381000-108408800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:108382000-108396000	Weak transcription	Pancreas	Pancrea
6	chr11:108383000-108398400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:108384000-108390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:108384800-108393000	Weak transcription	GM12878-XiMat	blood
9	chr11:108385000-108409000	Weak transcription	Fetal Kidney	kidney
10	chr11:108385000-108414000	Weak transcription	HSMM	muscle
11	chr11:108385000-108422800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:108385200-108396200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:108385200-108403600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:108385400-108391800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:108385400-108394800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:108385400-108395600	Weak transcription	Lung	lung
17	chr11:108385400-108409200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:108385600-108391000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:108385600-108392000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:108385600-108396000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:108385600-108396400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:108385600-108397000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:108385600-108397000	Weak transcription	K562	blood
24	chr11:108385600-108402600	Weak transcription	Brain Anterior Caudate	brain
25	chr11:108385600-108405000	Weak transcription	HMEC	breast
26	chr11:108385600-108405200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:108385600-108408400	Weak transcription	Aorta	Aorta
28	chr11:108385600-108408800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:108385600-108409400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:108385600-108412400	Weak transcription	HSMMtube	muscle
31	chr11:108387600-108394400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:108389200-108394800	Weak transcription	NHEK	skin
33	chr11:108389400-108390600	Enhancers	Placenta	Placenta
34	chr11:108389600-108397200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:108390200-108391000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:108390400-108397000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links