Variant report

Variant	rs4437999
Chromosome Location	chr11:108432609-108432610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108430808..108434301-chr11:108434645..108436882,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10890850	1.00[EUR][1000 genomes]
rs11212688	1.00[EUR][1000 genomes]
rs11212696	1.00[EUR][1000 genomes]
rs11821915	1.00[MEX][hapmap]
rs12269879	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12271580	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12271879	1.00[EUR][1000 genomes]
rs12274421	1.00[EUR][1000 genomes]
rs12278754	1.00[EUR][1000 genomes]
rs12286855	1.00[EUR][1000 genomes]
rs12290857	1.00[EUR][1000 genomes]
rs1940209	1.00[EUR][1000 genomes]
rs1940210	1.00[EUR][1000 genomes]
rs2840346	1.00[MEX][hapmap]
rs4384355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547096	1.00[EUR][1000 genomes]
rs9971453	1.00[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108417200-108441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108422400-108441600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:108423000-108436000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:108423400-108436000	Weak transcription	Liver	Liver
5	chr11:108423600-108441400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:108424200-108439400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:108428600-108442000	Weak transcription	K562	blood
8	chr11:108429200-108434600	Enhancers	HSMM	muscle
9	chr11:108430400-108436600	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:108430800-108433400	Weak transcription	GM12878-XiMat	blood
11	chr11:108431000-108433200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:108431000-108434000	Weak transcription	Gastric	stomach
13	chr11:108431000-108434400	Enhancers	Osteobl	bone
14	chr11:108431000-108434600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:108431000-108436200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:108431200-108434400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:108431400-108433200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:108432200-108432800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr11:108432200-108432800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:108432200-108432800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:108432200-108432800	Enhancers	Esophagus	oesophagus
22	chr11:108432200-108432800	Enhancers	Lung	lung
23	chr11:108432200-108432800	Enhancers	HMEC	breast
24	chr11:108432200-108433000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:108432200-108433000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:108432200-108433000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:108432200-108433000	Enhancers	Aorta	Aorta
28	chr11:108432200-108433200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:108432200-108434000	Enhancers	Fetal Lung	lung
30	chr11:108432200-108434200	Genic enhancers	NHEK	skin
31	chr11:108432200-108434400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:108432200-108434600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:108432200-108434600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:108432200-108434800	Genic enhancers	Placenta	Placenta
35	chr11:108432200-108435200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:108432400-108432800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:108432400-108432800	Enhancers	Pancreas	Pancrea
38	chr11:108432400-108432800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr11:108432400-108432800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:108432400-108432800	Flanking Active TSS	NHDF-Ad	bronchial
41	chr11:108432400-108432800	Flanking Active TSS	NHLF	lung
42	chr11:108432400-108433000	Enhancers	Primary hematopoietic stem cells	blood
43	chr11:108432400-108433000	Genic enhancers	Placenta Amnion	Placenta Amnion
44	chr11:108432600-108432800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:108432600-108432800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:108432600-108432800	Enhancers	HSMMtube	muscle
47	chr11:108432600-108433000	Enhancers	NH-A	brain
48	chr11:108432600-108433600	Weak transcription	Fetal Kidney	kidney
49	chr11:108432600-108434600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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