Variant report

Variant	rs10502231
Chromosome Location	chr11:119394485-119394486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12573938	1.00[ASN][1000 genomes]
rs12574200	1.00[ASN][1000 genomes]
rs21727	0.81[ASN][1000 genomes]
rs4366498	0.91[ASN][1000 genomes]
rs595242	0.94[ASN][1000 genomes]
rs7932236	1.00[MEX][hapmap]
rs7944565	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832284	chr11:119237650-119408625	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1054222	chr11:119295063-119406369	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv515	chr11:119358258-119402867	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119377400-119395800	Weak transcription	Spleen	Spleen
2	chr11:119393200-119395000	Weak transcription	Fetal Brain Female	brain
3	chr11:119393400-119394600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:119393400-119395200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr11:119393400-119404000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:119394000-119395000	Enhancers	Fetal Brain Male	brain
7	chr11:119394000-119398200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:119394400-119394800	Flanking Active TSS	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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