Variant report

Variant	rs12573938
Chromosome Location	chr11:119392822-119392823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10502231	1.00[ASN][1000 genomes]
rs12574200	1.00[ASN][1000 genomes]
rs21727	0.81[ASN][1000 genomes]
rs4366498	0.91[ASN][1000 genomes]
rs595242	0.94[ASN][1000 genomes]
rs7936827	1.00[AMR][1000 genomes]
rs7940498	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832284	chr11:119237650-119408625	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1054222	chr11:119295063-119406369	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv515	chr11:119358258-119402867	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119377400-119395800	Weak transcription	Spleen	Spleen
2	chr11:119387200-119394000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:119387600-119393400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:119389800-119393400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119392400-119393200	Enhancers	Fetal Brain Female	brain
6	chr11:119392600-119394000	Weak transcription	Brain Germinal Matrix	brain
7	chr11:119392600-119394000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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