Variant report

Variant	rs10502601
Chromosome Location	chr18:30035589-30035590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30035195..30038874-chr18:30050271..30052626,3	MCF-7	breast:
2	chr18:30035373..30036893-chr18:30039699..30042641,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1035799	1.00[ASW][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458864	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458867	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17744057	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2172388	0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57359242	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72639476	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639477	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
2	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
3	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:30029800-30037000	Enhancers	Brain Angular Gyrus	brain
5	chr18:30030400-30037400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr18:30030800-30039200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:30031200-30037400	Weak transcription	Psoas Muscle	Psoas
8	chr18:30031200-30048400	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:30031400-30048200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:30031800-30046800	Weak transcription	Stomach Mucosa	stomach
11	chr18:30032200-30037000	Enhancers	Brain Substantia Nigra	brain
12	chr18:30032400-30035800	Enhancers	Brain Cingulate Gyrus	brain
13	chr18:30033400-30035800	Enhancers	Brain Anterior Caudate	brain
14	chr18:30033400-30038600	Enhancers	Fetal Heart	heart
15	chr18:30033600-30035600	Enhancers	Brain Hippocampus Middle	brain
16	chr18:30033600-30036000	Enhancers	Fetal Brain Male	brain
17	chr18:30033600-30048600	Weak transcription	Aorta	Aorta
18	chr18:30034200-30035800	Enhancers	Colon Smooth Muscle	Colon
19	chr18:30034400-30035800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:30034600-30036000	Enhancers	Adipose Nuclei	Adipose
21	chr18:30034600-30036200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:30035200-30035600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr18:30035200-30035800	Enhancers	Fetal Kidney	kidney
24	chr18:30035200-30040400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr18:30035200-30040400	Weak transcription	HSMMtube	muscle
26	chr18:30035400-30035800	Enhancers	Rectal Smooth Muscle	rectum
27	chr18:30035400-30036800	Weak transcription	Liver	Liver
28	chr18:30035400-30036800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr18:30035400-30037400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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