Variant report

Variant	rs1458864
Chromosome Location	chr18:30037781-30037782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30035195..30038874-chr18:30050271..30052626,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1035799	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10502601	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17744057	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2172388	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57359242	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72639476	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30024200-30044800	Weak transcription	Right Ventricle	heart
2	chr18:30025000-30041200	Weak transcription	Left Ventricle	heart
3	chr18:30027200-30045400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:30030800-30039200	Weak transcription	Fetal Intestine Small	intestine
5	chr18:30031200-30048400	Weak transcription	Fetal Muscle Leg	muscle
6	chr18:30031400-30048200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:30031800-30046800	Weak transcription	Stomach Mucosa	stomach
8	chr18:30033400-30038600	Enhancers	Fetal Heart	heart
9	chr18:30033600-30048600	Weak transcription	Aorta	Aorta
10	chr18:30035200-30040400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr18:30035200-30040400	Weak transcription	HSMMtube	muscle
12	chr18:30035600-30038200	Weak transcription	Brain Hippocampus Middle	brain
13	chr18:30035800-30039000	Weak transcription	Fetal Kidney	kidney
14	chr18:30035800-30039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr18:30035800-30039600	Weak transcription	Brain Anterior Caudate	brain
16	chr18:30035800-30040600	Weak transcription	Colon Smooth Muscle	Colon
17	chr18:30036000-30039600	Weak transcription	Fetal Brain Male	brain
18	chr18:30036800-30042400	Enhancers	Brain Cingulate Gyrus	brain
19	chr18:30037000-30038200	Weak transcription	Brain Substantia Nigra	brain
20	chr18:30037000-30039000	Weak transcription	Brain Angular Gyrus	brain
21	chr18:30037400-30037800	Enhancers	Small Intestine	intestine
22	chr18:30037600-30038000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr18:30037600-30038000	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr18:30037600-30038800	Weak transcription	Liver	Liver
25	chr18:30037600-30039600	Weak transcription	Brain Inferior Temporal Lobe	brain

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