Variant report

Variant	rs10504268
Chromosome Location	chr8:59826620-59826621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16924195	0.89[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16924208	0.89[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17231026	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17232203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233300	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17296738	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17297508	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17300113	0.85[MEX][hapmap]
rs2218684	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62508361	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62508363	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6985657	0.82[JPT][hapmap]
rs72649495	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72651303	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72651304	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838202	0.85[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10504268	SEPP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
7	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:59821200-59835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:59821400-59833400	Weak transcription	Dnd41	blood
13	chr8:59821800-59835200	Weak transcription	Primary T cells from cord blood	blood
14	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:59824200-59827200	Strong transcription	Fetal Thymus	thymus
17	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:59826400-59827000	Genic enhancers	Thymus	Thymus
20	chr8:59826600-59826800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr8:59826600-59826800	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr8:59826600-59826800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:59826600-59826800	Enhancers	Rectal Smooth Muscle	rectum
24	chr8:59826600-59827000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr8:59826600-59827000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr8:59826600-59827000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:59826600-59827000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:59826600-59827000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:59826600-59827200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr8:59826600-59827200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:59826600-59827200	Enhancers	NHEK	skin

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