Variant report

Variant	rs17297508
Chromosome Location	chr8:59825065-59825066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504268	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16924195	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16924208	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17231026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17232203	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17233300	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17241003	0.82[JPT][hapmap]
rs17241654	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs17296738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17300113	0.82[JPT][hapmap]
rs2218684	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62508361	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62508363	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6985657	1.00[JPT][hapmap]
rs72649495	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72651303	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72651304	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7837624	0.82[JPT][hapmap]
rs7838202	0.82[JPT][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
4	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:59816000-59825800	Weak transcription	Fetal Kidney	kidney
8	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
10	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:59818800-59826400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59821200-59835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:59821400-59833400	Weak transcription	Dnd41	blood
17	chr8:59821800-59835200	Weak transcription	Primary T cells from cord blood	blood
18	chr8:59822800-59825200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr8:59823800-59826600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:59824000-59826600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59824200-59825200	Weak transcription	Hela-S3	cervix
24	chr8:59824200-59827200	Strong transcription	Fetal Thymus	thymus
25	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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