Variant report

Variant	rs17241003
Chromosome Location	chr8:59887525-59887526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10097311	0.81[ASN][1000 genomes]
rs17233300	1.00[JPT][hapmap]
rs17241654	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17297508	0.82[JPT][hapmap]
rs17300113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60871984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62504492	0.81[ASN][1000 genomes]
rs62508380	0.84[AMR][1000 genomes]
rs6985657	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7009288	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7837624	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:59877600-59887600	Weak transcription	Gastric	stomach
9	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:59879000-59887800	Weak transcription	Dnd41	blood
12	chr8:59879200-59887600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:59879200-59887600	Weak transcription	Fetal Stomach	stomach
14	chr8:59880600-59887600	Weak transcription	Pancreas	Pancrea
15	chr8:59884000-59887600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:59886000-59889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:59886400-59888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:59886600-59887600	Enhancers	Osteobl	bone
19	chr8:59886800-59887600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr8:59886800-59889000	Weak transcription	Fetal Thymus	thymus
21	chr8:59887000-59887600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr8:59887000-59887600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:59887000-59889200	Weak transcription	Thymus	Thymus
24	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
25	chr8:59887200-59887600	Weak transcription	Primary T cells from cord blood	blood
26	chr8:59887200-59887800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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