Variant report

Variant	rs17241654
Chromosome Location	chr8:59904049-59904050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10097311	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17233300	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs17241003	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17297508	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs17300113	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60871984	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62504492	0.84[ASN][1000 genomes]
rs62508361	0.87[AMR][1000 genomes]
rs62508363	0.87[AMR][1000 genomes]
rs62508380	0.92[AMR][1000 genomes]
rs6985657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7009288	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837624	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7838202	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
6	chr8:59897800-59904400	Strong transcription	Fetal Thymus	thymus
7	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:59900600-59904400	Weak transcription	Thymus	Thymus
9	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:59902400-59904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:59903400-59904400	Enhancers	Primary T cells from cord blood	blood
12	chr8:59903400-59904400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr8:59903400-59904400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:59903400-59904400	Weak transcription	Gastric	stomach
15	chr8:59903400-59904400	Weak transcription	Lung	lung
16	chr8:59903600-59904200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:59903600-59904200	Enhancers	Fetal Lung	lung
18	chr8:59903600-59904800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:59903600-59904800	Enhancers	Fetal Brain Male	brain
20	chr8:59903600-59905000	Active TSS	Brain Anterior Caudate	brain
21	chr8:59903800-59904200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:59903800-59904200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:59903800-59904200	Enhancers	Brain Angular Gyrus	brain
24	chr8:59903800-59904200	Enhancers	Fetal Stomach	stomach
25	chr8:59903800-59904200	Weak transcription	Right Atrium	heart
26	chr8:59903800-59904400	Active TSS	Primary T cells fromperipheralblood	blood
27	chr8:59903800-59904400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:59903800-59904400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr8:59903800-59904400	Active TSS	NHDF-Ad	bronchial
30	chr8:59903800-59904600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr8:59903800-59904600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:59903800-59904600	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr8:59903800-59905000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:59903800-59905200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr8:59903800-59905400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:59904000-59904200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:59904000-59904200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr8:59904000-59904200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr8:59904000-59904200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:59904000-59904200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:59904000-59904200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:59904000-59904200	Enhancers	Adipose Nuclei	Adipose
43	chr8:59904000-59904200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr8:59904000-59904200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr8:59904000-59904400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr8:59904000-59904400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr8:59904000-59904400	Active TSS	Stomach Smooth Muscle	stomach
48	chr8:59904000-59904600	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr8:59904000-59904800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:59904000-59904800	Active TSS	Primary T helper cells PMA-I stimulated	--

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